PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G194700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HD-ZIP

Protein Properties

Length: 202aa MW: 22211.9 Da PI: 9.1939

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G194700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.7e-19	89	143	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ + +s+ +++eLA++l+L+ rqV vWFqNrRa+ k Brast07G194700.1.p 89 RKKLRLTKEQCTLLEDSFHAHVILSQVQKQELARRLNLSPRQVEVWFQNRRARTK 143 788899***********************************************98 PP
2	HD-ZIP_I/II	112.3	3.1e-36	89	177	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq +lLE+sF+++ L++ +K+elar+L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr +++l++en+rL++e +L++ Brast07G194700.1.p 89 RKKLRLTKEQCTLLEDSFHAHVILSQVQKQELARRLNLSPRQVEVWFQNRRARTKLKQTEVECEFLKRYCESLTDENQRLKHELLDLQR 177 69**********************************************************************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-19	65	146	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-20	69	146	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	85	145	IPR001356	Homeobox domain
SMART	SM00389	5.7E-16	87	149	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-16	89	143	IPR001356	Homeobox domain
CDD	cd00086	8.99E-15	89	146	No hit	No description
PROSITE pattern	PS00027	0	120	143	IPR017970	Homeobox, conserved site
SMART	SM00340	6.7E-13	145	188	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.4E-7	145	176	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MEQEDFSSWL GLATGGCGPV RRGQDGERRR AKEETSCDRQ QLTAIGEKGG EGARQRISVR 60 GGGRSPSNGP SPSDGGSDAA AGGSTGGTRK KLRLTKEQCT LLEDSFHAHV ILSQVQKQEL 120 ARRLNLSPRQ VEVWFQNRRA RTKLKQTEVE CEFLKRYCES LTDENQRLKH ELLDLQRSAA 180 PRAAAAMLNF CPACEKVTLN N*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	93	TRKKLRL
2	137	145	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G194700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010227405.1	1e-122	homeobox-leucine zipper protein HOX18
Swissprot	Q5Z6F6	5e-52	HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBL	A0A0Q3RX66	1e-120	A0A0Q3RX66_BRADI; Uncharacterized protein
STRING	BRADI1G33870.1	1e-114	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8130	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	8e-40	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Brast07G194700.1.p