PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G197800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 186aa    MW: 19792.8 Da    PI: 5.9938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G197800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-182069255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr ++ +gr++AeIrdp++   ++ ++lg+f++ae+Aa+a+++a+++l+g
  Brast07G197800.1.p 20 RYRGVRKRP-SGRYAAEIRDPTK---KTPIWLGTFDSAEDAARAYDNAARSLRG 69
                        59*******.7*********864...6*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.5222077IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-212078IPR016177DNA-binding domain
PfamPF008474.0E-112069IPR001471AP2/ERF domain
SMARTSM003801.6E-342083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-302078IPR001471AP2/ERF domain
CDDcd000181.79E-272077No hitNo description
PRINTSPR003674.6E-82132IPR001471AP2/ERF domain
PRINTSPR003674.6E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRKAKPPQPQ PQASPKVEIR YRGVRKRPSG RYAAEIRDPT KKTPIWLGTF DSAEDAARAY  60
DNAARSLRGP TARTNFPTAT PLPRPPAAAA TSSHSSTVES WSGGAPRAPA VARSAAPTDI  120
TGEEEEDCRS YCGSSSSVCE DDGDDAAASR SPLPFDLNMP PPQDGADASA EADQMSFRYD  180
TLLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1920821477Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G197800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3600182e-74AK360018.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1108I12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563465.13e-94ethylene-responsive transcription factor 3
TrEMBLI1GWG76e-93I1GWG7_BRADI; Uncharacterized protein
STRINGBRADI1G33550.11e-93(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.16e-18ethylene response factor 8