PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G204600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C3H

Protein Properties

Length: 387aa MW: 43761.6 Da PI: 10.3856

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G204600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.2e-09	15	40	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r+++C++G++C FaHg Brast07G204600.1.p 15 YKTKLCALWQRSHHCPRGASCGFAHG 40 9************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.4E-14	9	48	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.04E-8	13	46	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0048	14	41	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13	14	42	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-7	15	40	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MREMAEPPPH RGPAYKTKLC ALWQRSHHCP RGASCGFAHG GSELRKPPPH SSFPPRIGPP 60 GRRDHRTHDF RGRPERRNSP RGRYSPERDT RGHLFRGQYR RPNSRDRGSS HSRSPINKSE 120 RRHKKKVDGE KTDSSGSFST SGNEDRKKDD RQSSGDEKDR GEAQLKQIEL DLKLKALRED 180 KSRLQTTLDK KIDETGILST RVDDLEAQLN KEKQNCERMT SKIKKLIKAH GRYMKAQEDL 240 KRSKGRFERL ADLLASDSLK SGTKEQGSSV NAGNDDPHSA YEMSADDQSQ KHGSKARKRS 300 TALSASEEEK SGKKRRVIGD DMIHMPGKYR PEDALESFNV KKGTDSPKVL SLKKLREGDN 360 NDEGIVVSSR NDFTDRYNGN EEEPVD*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MREMAEPPPH RGPAYKTKLC ALWQRSHHCP RGASCGFAHG GSELRKPPPH SSFPPRIGPP  60
GRRDHRTHDF RGRPERRNSP RGRYSPERDT RGHLFRGQYR RPNSRDRGSS HSRSPINKSE  120
RRHKKKVDGE KTDSSGSFST SGNEDRKKDD RQSSGDEKDR GEAQLKQIEL DLKLKALRED  180
KSRLQTTLDK KIDETGILST RVDDLEAQLN KEKQNCERMT SKIKKLIKAH GRYMKAQEDL  240
KRSKGRFERL ADLLASDSLK SGTKEQGSSV NAGNDDPHSA YEMSADDQSQ KHGSKARKRS  300
TALSASEEEK SGKKRRVIGD DMIHMPGKYR PEDALESFNV KKGTDSPKVL SLKKLREGDN  360
NDEGIVVSSR NDFTDRYNGN EEEPVD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	315	RKRSTALSASEEEKSGKKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G204600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003563431.2	0.0	zinc finger CCCH domain-containing protein 13
Swissprot	Q6H7U2	1e-100	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	A0A0Q3JYX6	0.0	A0A0Q3JYX6_BRADI; Uncharacterized protein
STRING	BRADI1G32977.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	1e-31	C3H family protein

Link Out ? help Back to Top
Phytozome	Brast07G204600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]