PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G213300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25294 Da    PI: 4.5629
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G213300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.12e-22959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        kri+n   r  tf+kRr+g+lKKA+EL vLCda   vi+fss+g+l++y+s
  Brast07G213300.1.p  9 KRIDNVASRGATFCKRRAGLLKKAHELAVLCDAHLGVIVFSSSGNLFDYCS 59
                        79***********************************************96 PP
2K-box592.1e-2073171399
               K-box   3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslk.eLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         +ss+++ +++ + +++  e++ L++e + L+ ++R+  GedL+sL  + eL  L+qqLe+ l+k+R++ +ell+eq+ee+++k + l+++n
  Brast07G213300.1.p  73 SSSTSRsTNDIQLQEMPAEIESLRQERDHLEASLRRQTGEDLSSLATEeELDDLQQQLESVLRKVRQRTDELLTEQLEESRHKVDILEDQN 163
                         444454589999*********************************98537***************************************** PP

               K-box  92 kaLrkkle 99 
                         + Lr+ ++
  Brast07G213300.1.p 164 NFLRHTMN 171
                         ****9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.81161IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-25278IPR002100Transcription factor, MADS-box
CDDcd002652.70E-36280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-24323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-201057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-243859IPR002100Transcription factor, MADS-box
PfamPF014866.6E-1982170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.75285176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGRVEMKR IDNVASRGAT FCKRRAGLLK KAHELAVLCD AHLGVIVFSS SGNLFDYCSP  60
HTSWSELIER YESSSTSRST NDIQLQEMPA EIESLRQERD HLEASLRRQT GEDLSSLATE  120
EELDDLQQQL ESVLRKVRQR TDELLTEQLE ESRHKVDILE DQNNFLRHTM NEEDMELQHA  180
AVESEGTLFG GFFPEVEEER GALTSLQLWP ELTQPSSLHD H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-15183184MEF2 CHIMERA
6byy_B3e-15183184MEF2 CHIMERA
6byy_C3e-15183184MEF2 CHIMERA
6byy_D3e-15183184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G213300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693120.0KF469312.1 Brachypodium distachyon MADS-box transcription factor 17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758000.11e-120MADS-box protein ZMM17-like isoform X1
SwissprotQ655V42e-54MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLI1GW011e-94I1GW01_BRADI; MADS-box transcription factor 17
STRINGBRADI1G32210.12e-95(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1951846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-34MIKC_MADS family protein