PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G213400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 143aa    MW: 16227.6 Da    PI: 10.0989
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G213400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.42.4e-20957149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        kri+n   r  tf kRr g+lKKA EL vLCda+v v++fss+gk  +y
  Brast07G213400.1.p  9 KRIDNAVSRGATFYKRRGGLLKKARELAVLCDAQVGVLVFSSKGKPADY 57
                        79******************************************97666 PP
2K-box40.21.4e-1472141573
               K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslk.eLqqLeqqLekslkkiRskKnell 73 
                         +++ +++ + +++ +e+++L++e + L   +R + GedL+s   k eL  L+qqLe+ l k+R++K  +l
  Brast07G213400.1.p  72 ESTTATDIERQQMFTEIQRLRQERDHLAAILRMRTGEDLSSVATKeELDDLQQQLESTLAKVRERKVLVL 141
                         55567888999*******************************98746*******************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.095161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-27283IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-22323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-201057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-223859IPR002100Transcription factor, MADS-box
PfamPF014864.3E-1278139IPR002487Transcription factor, K-box
PROSITE profilePS512979.67481142IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGRGRVEIKR IDNAVSRGAT FYKRRGGLLK KARELAVLCD AQVGVLVFSS KGKPADYFSP  60
NTSWSELIQR YESTTATDIE RQQMFTEIQR LRQERDHLAA ILRMRTGEDL SSVATKEELD  120
DLQQQLESTL AKVRERKVLV LI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G213400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289801.12e-60MADS-box protein ZMM17-like
RefseqXP_014758000.15e-60MADS-box protein ZMM17-like isoform X1
SwissprotQ655V44e-46MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLI1GW015e-59I1GW01_BRADI; MADS-box transcription factor 17
STRINGBRADI1G32210.18e-60(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.33e-35MIKC_MADS family protein