PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G222100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SBP
Protein Properties Length: 433aa    MW: 46227.3 Da    PI: 8.9539
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G222100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.91.8e-40185261177
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         +Cq+egC+adls ak+yhrrhkvCe h+ka+ v + g++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++
  Brast07G222100.1.p 185 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASLVSAGGKHQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 261
                         6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-33178247IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.282183260IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-38184263IPR004333Transcription factor, SBP-box
PfamPF031101.3E-30186259IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MMSGRMNNPS AAAGEDFPFA AMPPPPSSYA SFEQRAMYDN FDFAAAAAAF QFQQQQQQQH  60
QEHHQMLSLP PNANPNNLLH HHPMAPPPPP AMPMQLPMIV PGHGDPGSAM AYPALGMSAV  120
KREGEGAVDG MGRSIGLNLG RRTYFSPGDM MAVDRLLMRS RLGGVFGLGF GGPGGHGHHH  180
HQPPRCQAEG CKADLSGAKH YHRRHKVCEY HAKASLVSAG GKHQRFCQQC SRFHVLTEFD  240
EAKRSCRKRL AEHNRRRRKP ASNTGTATTA GKDSAAPPSS KKPNNAAGGA ISGSYTVDNK  300
TLSAAKSSTI SSNTSAISCL QQQDQSKAAA AAAALTLGAS PQDQSNAVYQ LAGHGHGHGH  360
QHQEQHFITS LLHNNNNNGN NNNNNILSCS SVCSNAMPPP ATANNGGEVS DQNNHHGSNN  420
NNNMHLFEVD FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-291862591184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242259KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G222100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560391.11e-173squamosa promoter-binding-like protein 10
SwissprotA2YFT93e-92SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE83e-92SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A0Q3H1V41e-172A0A0Q3H1V4_BRADI; Uncharacterized protein
STRINGBRADI1G31390.11e-129(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.16e-48squamosa promoter binding protein-like 8