PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G222700.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 257aa    MW: 27814.4 Da    PI: 6.966
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G222700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-152576155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Brast07G222700.2.p 25 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 76
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-102576IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-182586IPR016177DNA-binding domain
CDDcd000181.40E-242586No hitNo description
PROSITE profilePS5103219.0452684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-182685IPR001471AP2/ERF domain
SMARTSM003801.5E-332690IPR001471AP2/ERF domain
PRINTSPR003676.2E-52738IPR001471AP2/ERF domain
PRINTSPR003676.2E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MQSMTRQEFI ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ  60
EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV ESILSSDLPV GGGAAARASK FQTDPSLPPQ  120
NACVVSPDVL PPLEKDYWSQ LALHYQQQQH QQQQHQQQFH ASAFQTYGSG VNVDFTMGTS  180
SHSSSNGGAM WGATGQQDDG NRQSNSYSSD IPYAAAAAMV SGSAAGFEGS TGNNGTWVTS  240
NPSTAPQFYN YLFGME*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G222700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400031e-102BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563348.31e-168AP2-like ethylene-responsive transcription factor AIL5
TrEMBLI1GVQ31e-167I1GVQ3_BRADI; Uncharacterized protein
STRINGBRADI1G31337.11e-168(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-56AP2 family protein