PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G228400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 470aa    MW: 52253.4 Da    PI: 10.0034
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G228400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like729.1e-23184240156
             G2-like   1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+rlrWt+eLH +Fvea++qLG G++k  P++i  +m+v+ +  +++ SHLQkYR++
  Brast07G228400.1.p 184 KQRLRWTKELHGKFVEAIHQLGtGTDKVAPREICSMMDVDNIGTKNIGSHLQKYRTH 240
                         79*******************999*******************************97 PP
2Response_reg61.54.5e-21141231109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl +d++++ +++l+  l+  +y +v+ a+dg+ al+ l++ +  +Dl++  + mp+md+l+l+++i+  ++ +p+iv++a+++ e++ +a
  Brast07G228400.1.p  14 VLAIDEDRVCLKILEAKLRGFNY-DVTPAKDGKTALRALEKARepFDLVISELYMPDMDALDLIRRIAL-GMGIPVIVLSAYEDTEMVRNA 102
                         7899*******************.***************999999**********************87.569***********9999999 PP

                         H.HTTESEEEESS--HHHHHH CS
        Response_reg  90 l.kaGakdflsKpfdpeelvk 109
                         l + Ga  +l+Kp   ++l +
  Brast07G228400.1.p 103 LiSSGACSYLAKPACADQLKN 123
                         98***********99998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.4E-3411142No hitNo description
SuperFamilySSF521721.85E-3011141IPR011006CheY-like superfamily
SMARTSM004487.0E-2512125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.91213129IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-1614123IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.46E-2315129No hitNo description
Gene3DG3DSA:1.10.10.604.3E-22183243IPR009057Homeodomain-like
SuperFamilySSF466893.76E-13183243IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-18184240IPR006447Myb domain, plants
PfamPF002492.0E-5186238IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAARKEEYWA GMRVLAIDED RVCLKILEAK LRGFNYDVTP AKDGKTALRA LEKAREPFDL  60
VISELYMPDM DALDLIRRIA LGMGIPVIVL SAYEDTEMVR NALISSGACS YLAKPACADQ  120
LKNIWQHVLR RKRELARNHK SRCNTVADQR IKTGIAEAEQ GAKSTRKNSR TKRNEGDDDS  180
DGKKQRLRWT KELHGKFVEA IHQLGTGTDK VAPREICSMM DVDNIGTKNI GSHLQKYRTH  240
LKRSSDPKAR AAIKWTSYYN TSNSMLPSSN SNNRLATPSI QPRTIKHGGS TFKDVLPTLQ  300
DESHKSEDHA KALRDLLVKT NQGKASSHRD YSFGNLIDKQ MLEPVNPFPM QLPQLVNQSS  360
IGNFNNFWQN VASSKFPDIL NKDGTSLGPS NVNANVNIPK INQHASFAGA SSGQVQMSLN  420
GLHNQQVPDP MAASNTSSFV LINCSNPVRR STLEFYFTSA LALNLVVIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G228400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3JXP10.0A0A0Q3JXP1_BRADI; Uncharacterized protein
STRINGBRADI5G12160.11e-133(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2274825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.16e-53response regulator 12