PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G233700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 387aa    MW: 41748.7 Da    PI: 9.6133
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G233700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.3e-1894143155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Brast07G233700.1.p  94 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 143
                         78*******************......55************************997 PP
2AP236.11.6e-11186235154
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                         s+++GV+ +k  g+W+A+I         +k ++lg ++t+ +Aaka+++a+ +  
  Brast07G233700.1.p 186 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKAYDKAAISCG 235
                         789*******.7******77733....25**********77*********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-1594151IPR016177DNA-binding domain
PfamPF008477.0E-1094143IPR001471AP2/ERF domain
PROSITE profilePS5103217.64995151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-1795150IPR001471AP2/ERF domain
SMARTSM003801.4E-3095157IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-15186245IPR016177DNA-binding domain
PfamPF008473.7E-6186236IPR001471AP2/ERF domain
CDDcd000184.03E-11186244No hitNo description
Gene3DG3DSA:3.30.730.103.5E-15187244IPR001471AP2/ERF domain
PROSITE profilePS5103214.697187244IPR001471AP2/ERF domain
SMARTSM003803.2E-26187250IPR001471AP2/ERF domain
PRINTSPR003674.4E-5188199IPR001471AP2/ERF domain
PRINTSPR003674.4E-5226246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAAAGRSAFF YGAGAIALAA DEEDDGRRRF APARPVTQQL FPMTAAARKT PPLPQQHQAM  60
EQCVMAAAAA AAAGGQWARP ASRKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  120
LGGFDTAQAA ARAYDQAAIK FRGVDADINF VLGDYKEEIK KMSSFSKEEF VHVLRRQGAG  180
FVRGSSRFRG VTLHKCGKWE ARIGQLMGKK FVYLGLYDTE MDAAKAYDKA AISCGGEDAV  240
TNFEPEAPCD GGSLQQQSFG DELDLELSLG YSGRGGGDTI IQAAVPPGHR RRTSLTLETP  300
EEEKKTARAC YYPANNIWSI WTRPSSTPNS APGDHRQPYP SAAGAAAAAA AAAASSGFPP  360
ELGAAAAGVQ QLKHHRSGYD SRQPWQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G233700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573931e-176AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560338.11e-156floral homeotic protein APETALA 2
RefseqXP_024313700.11e-156floral homeotic protein APETALA 2
SwissprotA0A0N7KMH01e-129AP24_ORYSJ; APETALA2-like protein 4
TrEMBLI1GVD31e-154I1GVD3_BRADI; Uncharacterized protein
STRINGBRADI1G30337.11e-155(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-79AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]