PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G239200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 196aa    MW: 20801.7 Da    PI: 9.7037
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G239200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225275123
                        EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                        ++C +Cg sF+++   +rH+ + H
  Brast07G239200.1.p 52 FECAICGSSFRTPKACRRHLVRsH 75
                        89*****************99888 PP
2zf-C2H2163.5e-0594116123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cgk+F +   L  H ++H
  Brast07G239200.1.p  94 HVCKRCGKRFVTLRALAGHRSNH 116
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-551116No hitNo description
PROSITE profilePS501579.3495277IPR007087Zinc finger, C2H2
SMARTSM003550.0275275IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805475IPR007087Zinc finger, C2H2
PfamPF139129.1E-793118IPR007087Zinc finger, C2H2
SMARTSM003550.1894116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1894121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDAAPSYFPR LSLSVSGGGG GGDEPPRYQP WRVKSAHELD EAGFIDPLQT CFECAICGSS  60
FRTPKACRRH LVRSHKGGLR PGAPLPPKPL VLRHVCKRCG KRFVTLRALA GHRSNHKGKL  120
GCAWLSKGKQ PAMAARARAP PATATAGTSA AATASTTATT VVVRDFDLNE LPAPEEEEEL  180
QEKQQEKDPA APAAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G239200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3NGZ51e-55A0A0Q3NGZ5_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4985322