PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G239300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 196aa MW: 20627.3 Da PI: 7.9386

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G239300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	82	103	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C ++F+++ + H+r H Brast07G239300.1.p 82 RCPVCERTFRTPKAAHGHMRAH 103 7*******************98 PP
2	zf-C2H2	15.2	6.3e-05	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +Cg+ F+++ +L H +H Brast07G239300.1.p 127 YECAHCGTQFPTRQSLGGHRASH 149 99**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.203	81	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.044	81	103	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.18E-7	82	149	No hit	No description
Pfam	PF13894	0.0011	82	103	No hit	No description
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.9E-8	126	151	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.907	127	151	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.078	127	149	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	129	149	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MSSSTLVMSG AGHLVSSGAG AGGGGDDPSN NWPYKLPSSH ALDAAAAVLS NITIKKKKKL 60 QKKKPVAAGA GEEEGPLLIQ IRCPVCERTF RTPKAAHGHM RAHPGRAWRG MDPAPPPPPA 120 AAAGGRYECA HCGTQFPTRQ SLGGHRASHS GVPGCSELSR IMMQQQQAPR NVVVRPFDLN 180 ELPAPETEEE EEEEE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	63	KKKKKLQKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G239300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	I1GV76	2e-68	I1GV76_BRADI; Uncharacterized protein
STRING	BRADI1G29820.1	3e-69	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13010	27	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	7e-10	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Brast07G239300.1.p