PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G246200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 759aa    MW: 86506.7 Da    PI: 8.1319
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G246200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.85.7e-1667134172
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 
                         +fY++YA+++GFsvr+++++ks+++ge+t+ +f Cs eg++++++ +      ++++ rtgC+a+l +++++
  Brast07G246200.1.p  67 DFYRRYASQAGFSVRRRYTNKSNKTGEVTSCKFACSLEGFNNRTSIT----PPNSSSRRTGCNAHLILRRTQ 134
                         6*****************************************98877....889999*********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-1367134IPR004330FAR1 DNA binding domain
PfamPF105519.1E-14245310IPR018289MULE transposase domain
PROSITE profilePS5096610.509496532IPR007527Zinc finger, SWIM-type
SMARTSM005757.5E-6507534IPR006564Zinc finger, PMZ-type
PfamPF044340.0013508528IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MDPTQPQAPK PLPASSDSAS ATLQSSPPNP KSLAKPKPKP NAAAGEEKED CTPRMDMEFS  60
SEQHAYDFYR RYASQAGFSV RRRYTNKSNK TGEVTSCKFA CSLEGFNNRT SITPPNSSSR  120
RTGCNAHLIL RRTQPNTPSS RATTIHSSSS LLSLLLFFHV RIFHCILLPF LLKAPMMMPP  180
RCPFGPEAVG DQVWRGCRSP ELLNPSFHHA VQLDVEDKVA NVFWADTRMV IDYSHFGDVV  240
AFDVPVIFGL ALMYDETCES FQWLFQTFMH AMSGQVPKTF FSHQDMVIAK AVSLAMPCTN  300
HAICAWHVKH AATRNVNRLA KGHCDFIKEF KACINDYDEE TEFLTSWEAM INRYDLCDNV  360
WLQKLFQEKE KWARPYAKGI FSAGMSTRLN ERLNSDVRYH LRAEVDIVLL LRHLQKVIKD  420
RRYKELEFEY SSRLKLPCLK IRAPMLTQAS EVYTSMIFQL FQEEYEEFQS AYIVNRDESG  480
PCREYIVSIV EKEKQYTVYR NSTEQTVSCS CRKFETIGFL CSHALKILDT MDIKYIPDRY  540
IMKRWTKYAR CLTSPEVLGQ TVQAEKSHEI SNRYQHMCLK YVRLVARASE CEESYRVLDQ  600
FWGELGDKVE EILQKQISIG TSVTKPDIHN LKMSLSSITN GTESENVLDK SCSTAAKIVK  660
KKDKKGKSHP VNYIEKGLRK KQKVHSEQHA VQYAILNASG QSENAMFQDL EAPPNMSQGT  720
DLSSPMRDIN YEETHSGLSL TFTAELDFCG LSQFSGGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G246200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316849.10.0protein FAR1-RELATED SEQUENCE 9 isoform X1
RefseqXP_024316852.10.0protein FAR1-RELATED SEQUENCE 9 isoform X1
TrEMBLA0A0Q3RU520.0A0A0Q3RU52_BRADI; Uncharacterized protein
STRINGBRADI1G29147.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.15e-56FAR1 family protein