PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G000900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 1573aa    MW: 172610 Da    PI: 4.4257
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G000900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-079871008526
                          --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                          +C+ ++  G C++G +C+F+H+
  Brast08G000900.1.p  987 NCPSYMSKGSCSFGLSCHFNHP 1008
                          7********************8 PP
2zf-CCCH31.62.8e-1010461069427
                          ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                          ++C +++r+G C+yG rC+F+H++
  Brast08G000900.1.p 1046 RNCVYYMRNGACRYGKRCHFNHPE 1069
                          78********************96 PP
3zf-CCCH29.81e-0913041330127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                          +++++C+f+++  +Ck+G+ C+F H++
  Brast08G000900.1.p 1304 PGEPECPFYMKHRYCKFGSHCNFDHPK 1330
                          5799*********************96 PP
4zf-CCCH20.96.5e-0713731399127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                          ++++ Cr+++++G Cky + C F+H++
  Brast08G000900.1.p 1373 PGQPDCRYYMQFGKCKYLSACIFHHPK 1399
                          5789*********************96 PP
5zf-CCCH17.19.8e-0614491464823
                          GGGGTS--TTTTT-SS CS
             zf-CCCH    8 ffartGtCkyGdrCkF 23  
                          f+++tG C++G  C F
  Brast08G000900.1.p 1449 FYMKTGKCQFGLACEF 1464
                          9*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0499821009IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1279821010IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-69871008IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.55410421070IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-610421069IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-610451070IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-710461069IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-410481070IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.19212521280IPR000571Zinc finger, CCCH-type
SMARTSM003560.07212521279IPR000571Zinc finger, CCCH-type
SMARTSM003560.01513031330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.55813031331IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-713051330IPR000571Zinc finger, CCCH-type
SMARTSM003560.006613721399IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.51613721400IPR000571Zinc finger, CCCH-type
SMARTSM003565214451468IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.54914481469IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.87815071535IPR000571Zinc finger, CCCH-type
SMARTSM003562.915071534IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1573 aa     Download sequence    Send to blast
MIGGGGGAAD EEDQAAATRT PPSSPSPPTI VPASSPHGLG RRLLGSLIRG IGPSSPPPSP  60
VPKVGLSLLL HLKPNPSTNP PPPPPRHHPP PSSSDRHPTQ PAAAELLAAK GLLHLAVDPK  120
HSCGPRKLTD QGTAAGELGA AENHAVAVPE DRDQALLDDQ EAAVHTQGGP AITVVNPSAT  180
DTSAATQGEE TPVEEQDKLA PHQEQQQDTC PTWDGNAAEC QEEVVGQGFT DEHSAFKDGV  240
AGDGQDKVLQ HCSGDQLGAT RGDQEVVVVV EQDETTHGIS VENQGKEDRC TARDDAVEDQ  300
EAVEQDAMDQ RCKRTDGVAV KDQEEALEQC ATYELQTTEN DDAKDDEQDV VEPGVVHGGV  360
ATTENVAVRD HEVVVLQTVT DEMCAAMDDI AVENQEKDVE KCIAFDLGMT KNDDVVDEPS  420
RVTDGENLVV QEKDKLVAID KQDIFSDGNG LGYLDEEVLV VIDQQSTLKD VQEKVLQQCT  480
TSDQLGATRD DQEGLKQTDE TTYDIAVENQ ERVEWHTAQD DIVEDQEVVE QDAIDQRGES  540
IDAIAVKDQE KAVEQCPTYE FGTTENDDAK DYQKVVEQGV IDKGGATMDD TAINHQEEAV  600
EQCVTYEGTT RNDDANAEQE VVEQGIIDEE GPTMDDIAVK DHEVVVQSVI GMRASIDNSV  660
VENQGKELEQ CTTYHLGTTE SDDVVDSQEV AEQGVVNEGG STMEDNALKD HEVVEQSIID  720
GMRAATDDIA VEDQEQVPEQ CAVNESRAPM DEYTVGEKEK VVEQGVTSKQ GAMNMDVAVK  780
DQEKVMKQGV IDNHGTVPID DIVVTDGVKA VGQFVSGASI TSKDENPVEE HNTARNQGVI  840
DENGRTKDDI DVEEHVITDK WATTSDGTAL EDQRNESELC ISNEHITSKD VVAVYIQGDV  900
LEQRVGDEQG ATKFTVEKNN DVQERVCHEW GATEDDLVMD TTASEGISGI SSSQSVSVTV  960
NGSAGGIWKK EKVKFCVKYP QRPGKLNCPS YMSKGSCSFG LSCHFNHPSL KAKPDVSWFP  1020
SEQDSHGVAG NLELNRVGLP IREGARNCVY YMRNGACRYG KRCHFNHPEH VIDAQFSAPT  1080
GWEDASPSSR HLEKYSNDAT LDDTSYSKKS FEHATFDDTA QLRKSPEGAT LDDTAHLKKS  1140
PEGATLDDTS YSKRSFDHAT LDEKSSSSKV LPANILRMLL PPQKVPPSIE RKVMKVKKSS  1200
NWSSTSDDSD GCCSADSPDG PLCKQEHVDY PERPGRLDGP LYKQEHVDYS ERPQKPECPF  1260
IKRFGDCKFA SSCKYHHSKG RHPSRYHRKD PSLGGEVLEY PTRPGEPECP FYMKHRYCKF  1320
GSHCNFDHPK DLNPTTDSPA NEKKSVASSD HHASTRITLK DPALQQQQYP ERPGQPDCRY  1380
YMQFGKCKYL SACIFHHPKD RLPSGWHPSD PAQSDQYDTC QPTNTTRIEN FCQQAQIGAE  1440
IHGMPELPFY MKTGKCQFGL ACEFRYPKDT RSTTEETFGH RTDLAYDKFT RSENIVHQEE  1500
HAMNPERPGE PEGSYYMKHG YCNFQMNCKF HHPGDRLCNK PRYIVSHADA INSIVLFPGV  1560
RADSSGMTES GN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G000900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230944.20.0uncharacterized protein LOC100842536
RefseqXP_014753624.10.0uncharacterized protein LOC100842536
RefseqXP_014753625.10.0uncharacterized protein LOC100842536
TrEMBLA0A2K2D8J60.0A0A2K2D8J6_BRADI; Uncharacterized protein
STRINGMLOC_56050.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-35floral homeotic protein (HUA1)