PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G008500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 240aa    MW: 24865.6 Da    PI: 8.1509
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G008500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.11.5e-20146180135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
  Brast08G008500.1.p 146 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 180
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.969140176IPR000679Zinc finger, GATA-type
SMARTSM004019.2E-18140190IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.28E-13143179No hitNo description
Gene3DG3DSA:3.30.50.101.2E-16144180IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440146171IPR000679Zinc finger, GATA-type
CDDcd002023.96E-14146177No hitNo description
PfamPF003203.0E-18146180IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLQHCGGGGG RQNAAATSPG GAIANTFSLF FPPMPAKAAA GQQWPPAEQA ASYEDLSSTV  60
TSPSSPSSDD SSAASFLVDC TLSLGTPSSR ARPVSGAESC YHFDRQHQQQ SRPAAGAGIG  120
IGIGMGGVWS GGGREEQQLE EDRRCCANCG TSSTPLWRNG PRGPKSLCNA CGIRFKKEER  180
RAAETAGAGP GGCGLLSSSH GAQRMRAPRV APETPFMEWR LNAAPNSPAV WPERASLYQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G008500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565832.11e-79GATA transcription factor 15
SwissprotB8AX512e-34GAT15_ORYSI; GATA transcription factor 15
TrEMBLA0A0Q3QT272e-78A0A0Q3QT27_BRADI; Uncharacterized protein
STRINGBRADI2G14890.12e-78(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-22GATA transcription factor 20