PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G008900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 191aa    MW: 21253.9 Da    PI: 9.1583
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G008900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.41.9e-291366358
         ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                        +vrY+eCl+NhAa+ Ggh++DGCgEfmps+     a +l+CaACgCHR+FHR+e +
  Brast08G008900.1.p 13 AVRYHECLRNHAAAQGGHVLDGCGEFMPSPMP--AALSLTCAACGCHRSFHRKEDD 66
                        69***************************655..599****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.7E-261465IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-171464IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.9E-261564IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.2741664IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.7E-28103177IPR009057Homeodomain-like
SuperFamilySSF466892.99E-17104176IPR009057Homeodomain-like
TIGRFAMsTIGR015656.1E-25118174IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEFGGQGNND GAAVRYHECL RNHAAAQGGH VLDGCGEFMP SPMPAALSLT CAACGCHRSF  60
HRKEDDRRLP LPPPPLLMAP PPPFPYHHHS GGGGTTTTES SSEDPGPPSA AQEGARLKRF  120
RTRFTAEQKE RMQALAERVG WRVQRQDDAM VDAFCAHLGV RRHVFKVWMH NNKQHHLRLR  180
RQQSQQPQQQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-241181731873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G008900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639557.14e-66zinc-finger homeodomain protein 6
SwissprotB8AX536e-68ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A0E0DUU56e-68A0A0E0DUU5_9ORYZ; Uncharacterized protein
STRINGOGLUM05G28550.26e-67(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-46homeobox protein 22