PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G016400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 287aa    MW: 30222.9 Da    PI: 9.6089
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G016400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19106156256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr++  +g+WvAeIr p +   r r++lg++g++e Aa a+++a+ +l+ge
  Brast08G016400.1.p 106 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYGSPETAAHAYDRAAFRLRGE 156
                         59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.59E-28105163No hitNo description
Gene3DG3DSA:3.30.730.101.7E-29106163IPR001471AP2/ERF domain
SMARTSM003808.5E-33106169IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-21106163IPR016177DNA-binding domain
PROSITE profilePS5103222.695106163IPR001471AP2/ERF domain
PfamPF008471.0E-13107156IPR001471AP2/ERF domain
PRINTSPR003673.0E-12107118IPR001471AP2/ERF domain
PRINTSPR003673.0E-12145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDGGGSLRAL GASPGSAVSS LLLSPGGATA LDTVFSHLPP PATIPAPLGS SVYYRQSELL  60
RSFAAAHPTS SSSSSSSSSA ASFATAPFPA AAGAGEDDGA PKGAKLYRGV RQRQWGKWVA  120
EIRLPQNRVR VWLGTYGSPE TAAHAYDRAA FRLRGEYARL NFPGVMDSAD AARVPDALRP  180
LRDAVDAKIQ AIRVRMARKR ARARRLREET KQQQQKIANQ EPPAVSESAA ATSETTTTTS  240
SYGSPEAALS MGAAEADAIE CSLERMPSFD PELIWSMLSF SAAPEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18105170470ATERF1
3gcc_A2e-18105170470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202ARKRARA
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G016400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4243121e-123JX424312.1 Triticum durum AP2/ERF domain-containing transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565885.11e-142ethylene-responsive transcription factor ERF061
TrEMBLA0A3B6A3381e-104A0A3B6A338_WHEAT; Uncharacterized protein
STRINGBRADI2G15847.11e-141(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-32ERF family protein