PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G016800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 245aa    MW: 25807.8 Da    PI: 7.2667
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G016800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY826e-2692152259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg +WrKYGqK++ g+++pr+Y+rCt++   gC+++k+v+r+a dp +++++Y+g H++ 
  Brast08G016800.1.p  92 EDGLSWRKYGQKDILGAKYPRAYFRCTHRhsqGCQATKQVQRAAGDPLLFDVVYHGGHTCA 152
                         8***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2677152IPR003657WRKY domain
SuperFamilySSF1182903.4E-2485152IPR003657WRKY domain
PROSITE profilePS508112186149IPR003657WRKY domain
SMARTSM007744.7E-3891153IPR003657WRKY domain
PfamPF031067.7E-2592151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSVGGGLAAE LDRLLEMARE LEARVERGSP ATARDLCAAL AATVDNAIRL AGSRSCGAIA  60
AAGSGKVRKR GAMEKVRQQV RVSSVHDLAA LEDGLSWRKY GQKDILGAKY PRAYFRCTHR  120
HSQGCQATKQ VQRAAGDPLL FDVVYHGGHT CAQGSQHQHQ QQHASAAGQE QQQQQGGSPV  180
GADGMQWPLE PVTPFSFPSS PAGNGGFQAG GSGGSGADMG FEAQLDELLF LDPSEFLQPG  240
FHNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-2091151868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G016800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3698043e-61AK369804.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2098L04.
GenBankDQ8631103e-61DQ863110.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 26 (WRKY26) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565888.11e-103probable WRKY transcription factor 41
TrEMBLI1HG781e-101I1HG78_BRADI; Uncharacterized protein
STRINGBRADI2G15877.11e-102(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.29e-30WRKY family protein