PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G019700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 558aa    MW: 58248.3 Da    PI: 7.0049
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G019700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30320378259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  Brast08G019700.1.p 320 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 378
                         7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-34304380IPR003657WRKY domain
SuperFamilySSF1182909.15E-28312380IPR003657WRKY domain
PROSITE profilePS5081130.182314380IPR003657WRKY domain
SMARTSM007749.7E-37319379IPR003657WRKY domain
PfamPF031069.5E-27321378IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MESPPPFAGL KRGEMDFFET ELRKEKRDRK ELAAAGAGDD DGLGSNKGDD LTIDMGLHVG  60
RRTMARRNSG SEESTVDDGG VSSNDELDHH HYREAKAELA ATKSELARVS EENKRLKTML  120
SSANSKCNSL HVQFTLLQQQ QRTASSSHGG HRVHELLDPD KHHHQQQNLD QLPTTAPAAL  180
NLPRQFISLG SSPDEPLPAR GSNGSLDCAP SSNNPIGVDG MVVGGKVADL VPMPPAFDYH  240
HHHGGSHDSR GAVGGGSDLE PQSCWLPGGK VPKFLPPGIK AVPEPAPAPV QQQPPEAAAA  300
ATMRKARVSV RARSEAAMIS DGCQWRKYGQ KMAKGNPCPR AYYRCTMAAG CPVRKQVQRC  360
AEDRTVLITT YEGNHNHPLP PAAMAMATTT AAAATMLLSG SMPSADAAGG IMAGSNFMAR  420
AVLPCSPSSV ATISASAPFP TVTLDLTAPP PLKEALAEAA ARPVALPQLF GQKLYDQAKL  480
SAVQAVAGTN GKPTVDGGGA QLADTVSAAS AVIASDPQFT RVLAAAITSY ISNSSGSTGT  540
AQPMASGGGD SCSRDDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-22310380877Probable WRKY transcription factor 4
2lex_A4e-22310380877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G019700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209868e-39AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149618e-39AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126138e-39CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231012.20.0probable WRKY transcription factor 31
TrEMBLI1HGA70.0I1HGA7_BRADI; Uncharacterized protein
STRINGBRADI2G16150.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-69WRKY family protein