PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G026400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 299aa    MW: 32071.2 Da    PI: 9.6914
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G026400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.61.8e-0935115186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++ e+ aL++a  ++  +l+rg+l++ + +ev++++ ++ g    p  Ck++ + ++k+yk ++  +        s +++fd+l+
  Brast08G026400.1.p  35 CWSEGETAALVDAWGSRFVELNRGNLRQEHCQEVANAVnSRPGAAAHPLACKNRVRTIKKKYKDERVCSAP------SIWSFFDELD 115
                         7*************************************66667899*****************99877775......5799999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-1833117No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEAREMAVAA SWGGGGGGFV WLRPPNPSLP HREDCWSEGE TAALVDAWGS RFVELNRGNL  60
RQEHCQEVAN AVNSRPGAAA HPLACKNRVR TIKKKYKDER VCSAPSIWSF FDELDRLVGP  120
TLNGAASKRP SPALAPHLAL PAHPSSAARK YPSPSSSPSP PPPMVPPLPN YRRGAPLPSA  180
AFIQQGAAAA VSSARSGGSN KRRFRRETGG DGDSGVCELA RAIDAFAEMY ERVESAKQKH  240
SLEMERGRID FLKQLEVKRM ENFVDVHVKF AGASNGTSGV ELISSAAALP FLSSSNYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G026400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755186.11e-112trihelix transcription factor ASIL2
RefseqXP_014755187.11e-112trihelix transcription factor ASIL2
TrEMBLA0A0Q3MKS51e-111A0A0Q3MKS5_BRADI; Uncharacterized protein
STRINGBRADI2G16780.11e-112(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.14e-28sequence-specific DNA binding transcription factors