PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G044400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

WRKY

Protein Properties

Length: 223aa MW: 23275.7 Da PI: 7.1246

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G044400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	9e-31	135	192	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg+H h Brast08G044400.1.p 135 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCSVKKRVERDRDDPSYVVTTYEGTHSH 192 59*******************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.8E-33	121	195	IPR003657	WRKY domain
SuperFamily	SSF118290	6.41E-28	127	195	IPR003657	WRKY domain
PROSITE profile	PS50811	31.215	130	195	IPR003657	WRKY domain
SMART	SM00774	2.0E-34	135	194	IPR003657	WRKY domain
Pfam	PF03106	1.2E-24	136	192	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MAAVGAAPVL FYQQPALAAG DGAGCFFGPP SSPPMSSFFS SHGHGGSSST AGSSPASAFS 60 PALPAPPPPA AADPGQFDIS EYLFDDGIFA AVPPGAPAVA AHGGSAADQQ QQAAAVERPR 120 TERIAFRTRS EIEILDDGYK WRKYGKKSVK NSPNPRNYYR CSTEGCSVKK RVERDRDDPS 180 YVVTTYEGTH SHVSPSTVYY ASQDAASGRF FVAGTQPPGS LH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-25	125	196	7	78	Probable WRKY transcription factor 4
2lex_A	3e-25	125	196	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G044400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT837881	1e-145	CT837881.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124O14, full insert sequence.
GenBank	DQ298179	1e-145	DQ298179.1 Oryza sativa WRKY transcription factor 7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003568011.1	2e-96	probable WRKY transcription factor 48
Swissprot	Q93WU9	8e-41	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	I1HH54	5e-95	I1HH54_BRADI; Uncharacterized protein
STRING	BRADI2G18530.1	8e-96	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	5e-41	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	Brast08G044400.1.p

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]