PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G051400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 229aa    MW: 24845.1 Da    PI: 7.9161
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G051400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.5e-33149207159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+v+r a+d+ vv++tYeg Hnh+
  Brast08G051400.1.p 149 LDDGYRWRKYGQKAVKNSAFPRSYYRCTHHTCNVKKQVQRLAQDTAVVVTTYEGVHNHP 207
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-33135207IPR003657WRKY domain
SuperFamilySSF1182901.44E-28141208IPR003657WRKY domain
PROSITE profilePS5081128.667144209IPR003657WRKY domain
SMARTSM007746.6E-39149208IPR003657WRKY domain
PfamPF031064.4E-26150207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDNLQEEVDR GCCHMPMQPE EELRPVHQSL QYLQSPLLME QLQQQAAAGI PELVDWASLL  60
NLPLGPAAAA GASSQLSQQQ VETAGVGGPE AETTMVMSGG GDELQGMKGK GAAVGGGGRG  120
KGGSGRKGNK EKASRPRFAF QTRSENDVLD DGYRWRKYGQ KAVKNSAFPR SYYRCTHHTC  180
NVKKQVQRLA QDTAVVVTTY EGVHNHPCEK LMEALSPILK HLQFLSQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25140206874Probable WRKY transcription factor 4
2lex_A1e-25140206874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G051400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8404121e-97DQ840412.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 13 (WRKY13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566009.21e-99probable WRKY transcription factor 75
TrEMBLI1HHB63e-98I1HHB6_BRADI; Uncharacterized protein
STRINGBRADI2G19070.16e-99(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.16e-54WRKY DNA-binding protein 56