PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G056500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 368aa    MW: 38298.9 Da    PI: 5.8461
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G056500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.4e-18250284135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Brast08G056500.1.p 250 CLHCETDKTPQWRTGPLGPKTLCNACGVRYKSGRL 284
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.8E-681339IPR016679Transcription factor, GATA, plant
SMARTSM004014.0E-17244294IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.413244280IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-14244281IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.03E-15246307No hitNo description
CDDcd002021.36E-13249296No hitNo description
PROSITE patternPS003440250275IPR000679Zinc finger, GATA-type
PfamPF003207.2E-16250284IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEAAAAAECA AGGAREKKDA GEFFLVDDLL DLPCDEEEEE GGDEAAAGLD GDCGAGGGGE  60
AGNASGDSST VTAVDSGNNS LSGLADGDFS GGLCEPYDQL AELEWVSNYM GDDTLPTEDL  120
RKLQLISGIP SSLQAPATPR APAPPLAACA GGALHSEAAL VSVPGKARSK RSRVAPCNWS  180
SRLLVLPPAP ASPPSPASAV ISPSESGTAF PPFPAKKPAK AAKKKESLPS AAAAAPMTAA  240
AMAAAEGRRC LHCETDKTPQ WRTGPLGPKT LCNACGVRYK SGRLVPEYRP AASPTFEASR  300
HSNSHRKVVE LRRQKEPPQQ QQQQLLHHQQ QPQLQLHVPS PLLFDGPLIA GADEFLLRNR  360
IGHHSYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G056500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566028.11e-145GATA transcription factor 12
TrEMBLI1HHH61e-144I1HHH6_BRADI; Uncharacterized protein
STRINGBRADI2G19480.11e-145(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-41GATA transcription factor 9