PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G059200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 99aa    MW: 11160.8 Da    PI: 10.7917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G059200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.81.5e-093883250
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtae.eAakaaiaar 50
                        +y+ Vr ++ +g+W+A I dp+    +  r++lg+f +a+  Aa +++ a+
  Brast08G059200.1.p 38 QYRDVRCRP-WGKWAAIISDPV----KgVRVWLGTFPSANhTAALRYDDAA 83
                        7899**999.**********75....44**********8889999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.13E-163783No hitNo description
SuperFamilySSF541719.81E-113888IPR016177DNA-binding domain
SMARTSM003801.0E-83896IPR001471AP2/ERF domain
PROSITE profilePS5103212.83875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-163886IPR001471AP2/ERF domain
PRINTSPR003671.1E-63950IPR001471AP2/ERF domain
PfamPF008471.3E-43983IPR001471AP2/ERF domain
PRINTSPR003671.1E-66177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MASVVVLKEM RPSELTSWLP SNYNSKNYKA IQTVVVTQYR DVRCRPWGKW AAIISDPVKG  60
VRVWLGTFPS ANHTAALRYD DAAVVGLGIR NRNRDDRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G059200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022022794.16e-14ethylene-responsive transcription factor ERF113-like
STRINGPavir.Ib02796.1.p1e-13(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-15ERF family protein