PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G060500.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

VOZ

Protein Properties

Length: 423aa MW: 47031.4 Da PI: 5.8213

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G060500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	418.1	1.5e-128	89	306	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 p+ps++lgpkcalwdc rp++gse++qdyc+ +ha laln+ gl gt+pv+rp+gidlkdg+lf+al akvqgk+vgip+cegaat+kspw Brast08G060500.2.p 89 PSPSQYLGPKCALWDCGRPVRGSEECQDYCNPYHAGLALNDdGLQGTRPVMRPRGIDLKDGPLFDALCAKVQGKNVGIPVCEGAATSKSPW 179 89************************************9799******************************************* PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldala 181 na+elfdlsllege++rewlffd+prrafesgnrkqrslpdy grgwhesrkqvmk+fgglk+syymdpqpss++ewhl+eyein+++ala Brast08G060500.2.p 180 NAPELFDLSLLEGESLREWLFFDRPRRAFESGNRKQRSLPDYGGRGWHESRKQVMKDFGGLKKSYYMDPQPSSNYEWHLFEYEINDSNALA 270 *************************************************************************************** PP VOZ 182 lyrlelklvdekksakgkvskdsladlqkklgrlta 217 lyrle+k++d+k+s+k+k++++sl+++q+++++l+a Brast08G060500.2.p 271 LYRLEFKSSDAKRSVKSKLASSSLNEIQQQMVKLSA 306 ********************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MRCFRTRLLS CISLQMYYID HELSIDDFLH GSNPDSLSNL QGIGLLEHQQ FNLPLDLEPP 60 NSYADANNSV QNTGDVLFHM SDLLTTMCPS PSQYLGPKCA LWDCGRPVRG SEECQDYCNP 120 YHAGLALNDD GLQGTRPVMR PRGIDLKDGP LFDALCAKVQ GKNVGIPVCE GAATSKSPWN 180 APELFDLSLL EGESLREWLF FDRPRRAFES GNRKQRSLPD YGGRGWHESR KQVMKDFGGL 240 KKSYYMDPQP SSNYEWHLFE YEINDSNALA LYRLEFKSSD AKRSVKSKLA SSSLNEIQQQ 300 MVKLSADSPG DNKRAARSKT KANQKDSNGN TYPALNVPNQ ASASSAYETV ALNIPKQASA 360 SNAYETASLN IPNQANTSNA YQEVSQVDEM AFLNENVMYG PHLPYGYPAE KGHFHWNPSD 420 GA*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MRCFRTRLLS CISLQMYYID HELSIDDFLH GSNPDSLSNL QGIGLLEHQQ FNLPLDLEPP  60
NSYADANNSV QNTGDVLFHM SDLLTTMCPS PSQYLGPKCA LWDCGRPVRG SEECQDYCNP  120
YHAGLALNDD GLQGTRPVMR PRGIDLKDGP LFDALCAKVQ GKNVGIPVCE GAATSKSPWN  180
APELFDLSLL EGESLREWLF FDRPRRAFES GNRKQRSLPD YGGRGWHESR KQVMKDFGGL  240
KKSYYMDPQP SSNYEWHLFE YEINDSNALA LYRLEFKSSD AKRSVKSKLA SSSLNEIQQQ  300
MVKLSADSPG DNKRAARSKT KANQKDSNGN TYPALNVPNQ ASASSAYETV ALNIPKQASA  360
SNAYETASLN IPNQANTSNA YQEVSQVDEM AFLNENVMYG PHLPYGYPAE KGHFHWNPSD  420
GA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G060500.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376294	0.0	AK376294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3120B09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003568104.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-114	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	I1HHM2	0.0	I1HHM2_BRADI; Uncharacterized protein
STRING	BRADI2G19820.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-116	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Brast08G060500.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]