PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G061400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 199aa MW: 21049.7 Da PI: 9.561

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G061400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.4	5.8e-37	58	113	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+cprC s++tkfCy+nny+++qPr+fC+aC+ryWt+GGa+rnvPvG+grrkn+ Brast08G061400.1.p 58 PLPCPRCRSEDTKFCYFNNYNVNQPRHFCRACHRYWTAGGAIRNVPVGSGRRKNRP 113 679**************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.6E-31	58	112	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-25	59	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.397	59	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	61	97	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MVEMAGFKLF GKVITRQPAR ASPEVSGSSL SSSGGGRGSV EQLEEAARRA RAAAGARPLP 60 CPRCRSEDTK FCYFNNYNVN QPRHFCRACH RYWTAGGAIR NVPVGSGRRK NRPALPPHAD 120 YHVRLAGPAP GDMAPALGGF VPAPAPSEHG WPSLYVVPSP APAAAGGYTG HGAEMEQCWW 180 LVHAERPSSS LGSSDPAF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G061400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ312328	3e-82	AJ312328.1 Hordeum vulgare partial dof151 gene for dof zinc finger protein.
GenBank	AK357438	3e-82	AK357438.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1053I13.
GenBank	AK357968	3e-82	AK357968.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1066A04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566046.2	2e-82	dof zinc finger protein 5
TrEMBL	I1HHN4	4e-81	I1HHN4_BRADI; Uncharacterized protein
STRING	BRADI2G19930.1	6e-82	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	3e-32	Dof family protein

Link Out ? help Back to Top
Phytozome	Brast08G061400.1.p