PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G073400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 336aa    MW: 36639.8 Da    PI: 9.5634
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G073400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.57.9e-104888545
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                        k  rr+++NReAAr+sR+RKka++++Le  + +L +  ++L
  Brast08G073400.1.p 48 KTLRRLAQNREAARKSRLRKKAYVQKLESSSLKLAQLEQEL 88
                        6789************************9777776655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.1E-644107IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0024690IPR004827Basic-leucine zipper domain
PfamPF001703.9E-74888IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.8E-84992No hitNo description
SuperFamilySSF579596.11E-75092No hitNo description
PROSITE patternPS0003605166IPR004827Basic-leucine zipper domain
PfamPF141443.2E-28130206IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDYASPAGTD TSTDPGIGKK NQVFEQGHVA ALKAFDSGDK SKVKLGQKTL RRLAQNREAA  60
RKSRLRKKAY VQKLESSSLK LAQLEQELQR ARQQGYVIST SGEQPHSANK NGALALDVEY  120
GRWLEEHNRQ IDELRATINA RATDSDLQAI VDSIMAHVDE IFSLKSVATK ANAFHVLAGA  180
WTTPVERCFL WLGGFRPSEI PKLLASQLEP LTEKQLASIC SLRQSSQQAE DALSRDMEVL  240
LISAAEIVAS GTSPTCCPAG SSGETGQMSA AIGKLGAVES LMLQADELRL RILQDVKRIL  300
TTRQYARALL AISGYFSRLR ALSSLWIARP STVMN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G073400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315514.10.0transcription factor TGAL1
RefseqXP_024315515.10.0transcription factor TGAL1
SwissprotQ415581e-150HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLI1HI580.0I1HI58_BRADI; Uncharacterized protein
STRINGBRADI2G21380.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2086457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-118TGACG motif-binding factor 6