PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G073400.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 327aa    MW: 35837.2 Da    PI: 9.7921
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G073400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.57.6e-103979545
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                        k  rr+++NReAAr+sR+RKka++++Le  + +L +  ++L
  Brast08G073400.2.p 39 KTLRRLAQNREAARKSRLRKKAYVQKLESSSLKLAQLEQEL 79
                        6789************************9777776655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.1E-63598IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0023781IPR004827Basic-leucine zipper domain
PfamPF001703.7E-73979IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.6E-84083No hitNo description
SuperFamilySSF579595.87E-74183No hitNo description
PROSITE patternPS0003604257IPR004827Basic-leucine zipper domain
PfamPF141443.1E-28121197IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MFLLACLLNL SANKFEQGHV AALKAFDSGD KSKVKLGQKT LRRLAQNREA ARKSRLRKKA  60
YVQKLESSSL KLAQLEQELQ RARQQGYVIS TSGEQPHSAN KNGALALDVE YGRWLEEHNR  120
QIDELRATIN ARATDSDLQA IVDSIMAHVD EIFSLKSVAT KANAFHVLAG AWTTPVERCF  180
LWLGGFRPSE IPKLLASQLE PLTEKQLASI CSLRQSSQQA EDALSRDMEV LLISAAEIVA  240
SGTSPTCCPA GSSGETGQMS AAIGKLGAVE SLMLQADELR LRILQDVKRI LTTRQYARAL  300
LAISGYFSRL RALSSLWIAR PSTVMN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G073400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315514.10.0transcription factor TGAL1
RefseqXP_024315515.10.0transcription factor TGAL1
SwissprotQ6IVC21e-147TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLI1HI580.0I1HI58_BRADI; Uncharacterized protein
STRINGBRADI2G21380.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-115TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]