PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G074600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 346aa    MW: 36970.7 Da    PI: 6.7732
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G074600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.6e-161242111094
                         HHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3  10 vlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           +++ l++p+ +a+ +      g +++   l + d+sgr+W ++++y   ++++++++lt+GW++F k++   +gD+++F+++   + +l
  Brast08G074600.1.p 124 GKNHCSLYVPNACATGIfpaldAGRHNQ--SLHFSDLSGRVWPFTHTYaglTGRRRQHLLTSGWNDFKKDKSAAAGDVLLFMRS---GDRL 209
                         445699********999**998555445..6*******************9999999*************************54...4445 PP

                         EE CS
                  B3  93 vv 94 
                         ++
  Brast08G074600.1.p 210 LI 211
                         55 PP
2Auxin_resp26.62.6e-10231278149
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmaf 49 
                         aa+ a+ +s+F+v++ Pr   +eF v++ +v +a +v++ +GmR+ ++ 
  Brast08G074600.1.p 231 AARLAADGSAFTVTWFPRL-GTEFLVPRGEVDAANQVNWRPGMRVSIRT 278
                         6788999***********8.57***********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-20111211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-15112208IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-9113207No hitNo description
SMARTSM010193.9E-4114217IPR003340B3 DNA binding domain
PROSITE profilePS5086310.109115217IPR003340B3 DNA binding domain
PfamPF023622.7E-12125211IPR003340B3 DNA binding domain
PfamPF065078.8E-7231279IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAQPLPAALD RRVWLACAPP LSRVPEVGSE VYYFPRGHAE QCHGAPPGQG QGQFAGKFVC  60
TVRAVGLFAT GRDAVYATIT LRPGGADADP QANNQAPAAL QRDADALADC IYLFPKVVST  120
GEAGKNHCSL YVPNACATGI FPALDAGRHN QSLHFSDLSG RVWPFTHTYA GLTGRRRQHL  180
LTSGWNDFKK DKSAAAGDVL LFMRSGDRLL IALQRAENPA PLASLEDVMD AARLAADGSA  240
FTVTWFPRLG TEFLVPRGEV DAANQVNWRP GMRVSIRTAI LRPGVVDTVP SGRVSVVYGT  300
VTAVHDRAWK MLEVDWANGC SCQDVHDLST DDEPSSDSSC AGVSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A1e-25531615335Auxin response factor 1
4ldx_B1e-25531615335Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G074600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314537.11e-115auxin response factor 13-like
TrEMBLA0A0Q3G5A21e-146A0A0Q3G5A2_BRADI; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5004122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.13e-29auxin response factor 16