PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G076700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 191aa    MW: 20038.5 Da    PI: 10.9049
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G076700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-194189355
                 AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr ++ +gr++AeIrd ++    ++r++lg+++t+ +Aa a+++a+ +l+g
  Brast08G076700.1.p 41 YRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTYDTPVDAALAYDRAAVALRG 89
                        9*******.**********883....5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-3440103IPR001471AP2/ERF domain
PROSITE profilePS5103221.2464097IPR001471AP2/ERF domain
PRINTSPR003671.9E-94152IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-214197IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.6E-304197IPR001471AP2/ERF domain
CDDcd000183.27E-294196No hitNo description
PfamPF008471.9E-114189IPR001471AP2/ERF domain
PRINTSPR003671.9E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MQGMMRGGGD QRSRCSGGRG VVASGGGGAG GEGGRRGEAP YRGVRKRPWG RYAAEIRDPW  60
KKTRVWLGTY DTPVDAALAY DRAAVALRGS KARTNFGSGS GSGLLHLHPQ QSPRPAAHVP  120
AATTTFGGLD VTHPSPWHFV YFPSRLQDFL TQAPGPVAPS LPSTVLELRT GPSAAPTFDL  180
NEPPSMLFGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-204196662ATERF1
3gcc_A4e-204196662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G076700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085236e-77AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK2423936e-77AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence.
GenBankAP0149616e-77AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126136e-77CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8288806e-77CT828880.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038E23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566084.15e-89ethylene-responsive transcription factor 12
TrEMBLI1HI201e-87I1HI20_BRADI; Uncharacterized protein
STRINGBRADI2G21067.12e-88(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-21ERF domain protein 12