PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G084600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 281aa    MW: 30193.3 Da    PI: 5.195
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G084600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.23.9e-24107167158
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                         +dDgy WrKYGqKe+ +s +pr Y+rC+++   gCp++++v++s++dp++ ++tY g+H++
  Brast08G084600.1.p 107 VDDGYVWRKYGQKEILNSSHPRLYFRCSYKhdrGCPATRHVQHSDHDPSLYVVTYFGHHTC 167
                         59***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-25101167IPR003657WRKY domain
PROSITE profilePS5081121.287102170IPR003657WRKY domain
SuperFamilySSF1182908.76E-24103167IPR003657WRKY domain
SMARTSM007741.6E-36107169IPR003657WRKY domain
PfamPF031061.1E-23108167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAALVTPASV VSELMARGRE SAAALEALLQ GTSASPSGAP HELAAEILRC WDRALAALHA  60
AEIAGSDGRN KRKPPGAAAT DTRPKRRPRA SGGRDTPPAR VEEKRTVDDG YVWRKYGQKE  120
ILNSSHPRLY FRCSYKHDRG CPATRHVQHS DHDPSLYVVT YFGHHTCCVG GGDAAAHDLL  180
EETPEPAPFV IDFGSGSGSG SSGSLPWLSS SSEEDDDGGR SCEMTKQQVE STASADEASC  240
SSPAWDVPLP VCSSDWDYCG ESSFDYITEL INRYEISMFQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22105167668OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288RPKRRPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G084600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566135.11e-133probable WRKY transcription factor 54
TrEMBLA0A0Q3QX501e-131A0A0Q3QX50_BRADI; Uncharacterized protein
STRINGEMT198782e-87(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.18e-25WRKY DNA-binding protein 46