PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G087100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 517aa    MW: 55324.7 Da    PI: 6.5867
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G087100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.5e-31182239260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK++kgse+prsYY+C+ +gCp+kkkve++  d++v+ei+Y+g+Hnh+k
  Brast08G087100.1.p 182 DDGYNWRKYGQKQMKGSENPRSYYKCSAPGCPTKKKVEQAP-DGHVTEIVYKGTHNHPK 239
                         8****************************************.***************85 PP
2WRKY106.71.2e-33349407159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  Brast08G087100.1.p 349 LDDGYRWRKYGQKVVKGNPNPRSYYKCTMAGCPVRKHVERASQDLRAVVTTYEGKHNHD 407
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-28175240IPR003657WRKY domain
PROSITE profilePS5081123.525176240IPR003657WRKY domain
SuperFamilySSF1182902.09E-24178240IPR003657WRKY domain
SMARTSM007748.3E-34181239IPR003657WRKY domain
PfamPF031067.7E-25182238IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-36334409IPR003657WRKY domain
SuperFamilySSF1182903.14E-29341409IPR003657WRKY domain
PROSITE profilePS5081137.746344409IPR003657WRKY domain
SMARTSM007741.4E-38349408IPR003657WRKY domain
PfamPF031068.0E-26350407IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAMTPPPPSP SSYFNMSAGF LDSPILLTPS LFPSPTTGAF PSQPFNWMGT PENDSSLQGG  60
VKQQDDQRHY SGFTFQTTAP VPVPMAGTTS AAPSWPMAQL GGDSYNREQQ QPQQQQQQQP  120
WSYQSDTSGM DVTTTRPADF TTPFDFEAAP ADMLANNGGG YSTAPAGAGA GIRAQSGRRS  180
SDDGYNWRKY GQKQMKGSEN PRSYYKCSAP GCPTKKKVEQ APDGHVTEIV YKGTHNHPKP  240
LQNARRGSGS AFSSHAMQGA GAGAGSSINN DVSSAGDALS GTPENSSASY GDDEGANVNC  300
GEEFEVDEPD SKRWRGGEGA MAMAMGGINN RTVREPRVVV QTISDIDVLD DGYRWRKYGQ  360
KVVKGNPNPR SYYKCTMAGC PVRKHVERAS QDLRAVVTTY EGKHNHDVPA ARGSAAAAAR  420
YRAMPMPMPM PPAASGYLQG GHSSLRPDGF GATQHADEIG GPSSFALSGF GNAPSSYSSY  480
GSMQQQQQQH DAMYYAAAKD EPRDDDRFFL GNSLMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35170410678Probable WRKY transcription factor 4
2lex_A2e-35170410678Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G087100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1405544e-96AF140554.1 Avena sativa DNA-binding protein WRKY1 (wrky1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231268.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-133WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0Q3MNQ90.0A0A0Q3MNQ9_BRADI; Uncharacterized protein
STRINGBRADI2G22440.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-83WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]