PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G087900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 262aa    MW: 27876 Da    PI: 6.4222
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G087900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-174594255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +grWv+eIr+p     +  kr +lg+f ta +Aa a+++a+ +++g
  Brast08G087900.1.p 45 KYRGVRQRR-WGRWVSEIRHP-----NagKRQWLGTFVTAVDAAIAYDRAAVAIHG 94
                        8*****998.**********9.....446**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-3045103IPR001471AP2/ERF domain
CDDcd000187.89E-2845102No hitNo description
SuperFamilySSF541717.19E-2145102IPR016177DNA-binding domain
SMARTSM003808.4E-3345108IPR001471AP2/ERF domain
PfamPF008471.1E-84594IPR001471AP2/ERF domain
PROSITE profilePS5103221.48345102IPR001471AP2/ERF domain
PRINTSPR003678.3E-124657IPR001471AP2/ERF domain
PRINTSPR003678.3E-1284104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEQAPATPSS ASRTKRAKAK ASATPGVPTP AAHAGKGSPE KVHHKYRGVR QRRWGRWVSE  60
IRHPNAGKRQ WLGTFVTAVD AAIAYDRAAV AIHGPNACLN FPSASSTAAA AGSFSGEHAV  120
KPVVAAASVF GEHRVEPVGG PASVFDERGV KPMVAGTATS VFDEYEVKPM VTASVFDEHA  180
VKLMSDGGGG GRGGTWHCGA PWAAQEEVFA DYLDYPDIAR YFNLDPSSEM LAYYPDRKSE  240
EYQIDGFDDD VLDSPLWALG D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1646102663ATERF1
3gcc_A4e-1646102663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G087900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231269.21e-148dehydration-responsive element-binding protein 2D
TrEMBLA0A0Q3G3D41e-147A0A0Q3G3D4_BRADI; Uncharacterized protein
STRINGTraes_1BL_E0397871B.13e-58(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-06ERF family protein