PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G095000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 173aa    MW: 18346.2 Da    PI: 8.1697
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G095000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00191113123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C  Cg  F+    L  H+r+H
  Brast08G095000.1.p  91 HECAVCGLEFPMGQALGGHMRRH 113
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-84366IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5124471IPR007087Zinc finger, C2H2
SMARTSM003550.884466IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.54E-644113No hitNo description
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
PfamPF139121.0E-1091114IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.49291118IPR007087Zinc finger, C2H2
SMARTSM003550.7791113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MTLAQEPQTA AEGRAQVLSP GSSGSWRSSS PGAGSARRED SGAFECRTCG RRFPSFQALG  60
GHRTGHTRRH TLLPAASTQN KASPSHRAPQ HECAVCGLEF PMGQALGGHM RRHRLQEPAD  120
RHASRGGVEE EDTLDLNRSA PKEKGQDCPH EEGCSSSSGG SDSLPRLLNL LV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G095000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568294.11e-50zinc finger protein ZAT8
TrEMBLA0A0Q3IZS63e-49A0A0Q3IZS6_BRADI; Uncharacterized protein
STRINGBRADI2G23160.14e-50(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.12e-14C2H2 family protein