PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G096600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 606aa    MW: 66864.2 Da    PI: 7.269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G096600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-1763109148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEde l +av  + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  Brast08G096600.1.p  63 KGGWTPEEDETLRKAVYAFKGKNWKKIAESFP-DRTEVQCLHRWQKVL 109
                         688*****************************.************986 PP
2Myb_DNA-binding59.76.4e-19115161148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd+ ++d vk++G++ W+ Ia+ +  gR +kqc++rw+++l
  Brast08G096600.1.p 115 KGPWTQEEDDTIIDMVKKHGPRKWSQIAKSLD-GRIGKQCRERWHNHL 161
                         79******************************.*************97 PP
3Myb_DNA-binding59.76.3e-19167209145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WTteE++ lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+
  Brast08G096600.1.p 167 KEAWTTEEEQVLVKAHHLNGNK-WAEIAKLLP-GRTDNSIKNHWN 209
                         579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.71158109IPR017930Myb domain
SMARTSM007171.1E-1462111IPR001005SANT/Myb domain
PfamPF002492.0E-1563109IPR001005SANT/Myb domain
SuperFamilySSF466892.23E-1564119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-2365121IPR009057Homeodomain-like
CDDcd001672.10E-1366109No hitNo description
PROSITE profilePS5129431.54110165IPR017930Myb domain
SuperFamilySSF466895.99E-31112208IPR009057Homeodomain-like
SMARTSM007173.9E-17114163IPR001005SANT/Myb domain
PfamPF002492.5E-17115161IPR001005SANT/Myb domain
CDDcd001671.59E-15117161No hitNo description
Gene3DG3DSA:1.10.10.609.4E-27122169IPR009057Homeodomain-like
SMARTSM007175.9E-16166214IPR001005SANT/Myb domain
PROSITE profilePS5129422.675166216IPR017930Myb domain
PfamPF002499.5E-17167210IPR001005SANT/Myb domain
CDDcd001678.43E-13169209No hitNo description
Gene3DG3DSA:1.10.10.603.3E-22170216IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MGAMKVEERV GCTENRQHLV LSSPSASDGG SYGGHAQMSP AVSGPADSIS GRRRTSGPVR  60
RAKGGWTPEE DETLRKAVYA FKGKNWKKIA ESFPDRTEVQ CLHRWQKVLD PELIKGPWTQ  120
EEDDTIIDMV KKHGPRKWSQ IAKSLDGRIG KQCRERWHNH LDPQIRKEAW TTEEEQVLVK  180
AHHLNGNKWA EIAKLLPGRT DNSIKNHWNS SVRKRLEDYN TRAGMPIPQH AIHNDSKHAA  240
KLPSVDNHID LNKEQSISLK DDLVIVDHSD PIKSPPVCSF KNIKGCSGFL SLSIPSAQPV  300
TLCETSVSDD SAVAFGIMGL KMDSGHDKDM ELNFVSEKGL EINLSNEKSS EIHLITNKMG  360
PSGLAKSEGE RANIVCESPS QNGARSFGSL CYPIPMLDDT DLAHSPVFSA HHLREHCGIG  420
FQSPTGYTTP SPTDGKKSNH LSVESILKSA AENFPSTPSI LRRRKREKPT PTQDCELRID  480
TNSDSFETPI GNFTTDSPHS FKTATLLSSG HLDDKLPAAL GKFDVSPLYR LKSKRMAVLK  540
TIEKHLDFSS DAMDIYDSAG VLKSACMSSE SINFSTDNSS VQDKKMGDQM IGLETLANDF  600
LHKDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-68622165159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-68622165159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1461468RRRKREKP
2462467RRKREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G096600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568308.10.0transcription factor MYB3R-2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0Q3G3R20.0A0A0Q3G3R2_BRADI; Uncharacterized protein
STRINGBRADI2G23310.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-105myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]