PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G097000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 567aa    MW: 61860.8 Da    PI: 9.6161
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G097000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-1758104148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg WT+eEd +l +av  + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  Brast08G097000.1.p  58 RGGWTPEEDAKLRKAVSAFEGKNWKKIAESFP-DRTEAQCLHRWQKVL 104
                         789*****************************.************986 PP
2Myb_DNA-binding37.26.9e-121161511046
                         HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         e ++d vk++G++ W+ Ia+ +  gR +kqc++rw++
  Brast08G097000.1.p 116 ETIIDMVKEHGPRKWSDIAKSLR-GRIGKQCRERWHN 151
                         789********************.***********98 PP
3Myb_DNA-binding57.62.9e-18159201145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +g+WT eE+  lv+a++++G++ W+ Ia+ ++ gRt++ +k++w+
  Brast08G097000.1.p 159 KGSWTVEEERVLVNAHRLHGNK-WADIAKLLP-GRTDNAVKNHWN 201
                         799*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.41653108IPR017930Myb domain
SuperFamilySSF466899.31E-1656116IPR009057Homeodomain-like
SMARTSM007178.0E-1557106IPR001005SANT/Myb domain
PfamPF002491.1E-1558104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-1960116IPR009057Homeodomain-like
CDDcd001671.03E-1361104No hitNo description
PROSITE profilePS5129410.38109153IPR017930Myb domain
SMARTSM007175.7E-7109155IPR001005SANT/Myb domain
CDDcd001672.16E-9116153No hitNo description
PfamPF002494.4E-10116151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-19117160IPR009057Homeodomain-like
SuperFamilySSF466894.3E-27133215IPR009057Homeodomain-like
PROSITE profilePS5129427.324154208IPR017930Myb domain
SMARTSM007171.5E-16158206IPR001005SANT/Myb domain
PfamPF002492.6E-16159202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-23161209IPR009057Homeodomain-like
CDDcd001676.77E-13161201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MVALEERNGN GGTGWVLALP ASEGGSYGRH ARTSQVLSIP AYSISGRRQT SGAVRRPRGG  60
WTPEEDAKLR KAVSAFEGKN WKKIAESFPD RTEAQCLHRW QKVLDPELLK GPCTKETIID  120
MVKEHGPRKW SDIAKSLRGR IGKQCRERWH NSLNPQLRKG SWTVEEERVL VNAHRLHGNK  180
WADIAKLLPG RTDNAVKNHW NSSVRKRLKH HNRSVTHNDL KHAANRPPAE NHIDLNKEPS  240
INLQDCSVVV DHSHPTKRLS NFLSHSMPVA QPVTLCEASV ADDSAVALAL MGLKMDSGSD  300
QDKGLKLVSE KGLEINLPNE KGPEIDFITD KMGPSGLAKP GETANAGCES PSQNEARPFG  360
SLRYQIPMLH DTGLAHSPVF STHHGVAIQS PIGHTTPSPT HGKKSDLLSV DSILKSAAEN  420
FPGTPSILRS KRKRPAPAQD CELRIDINSG SFDTTMKNFN AYGPNSLKNS TSLSDVLGKS  480
DVSPSSRPRS KSMAILKTIE KHLDFSSDAM DISDTSGVSK PACPSSEIIN SSTDISRVLD  540
KKMGGHMVGL ETSTDDFVHT TKLDAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-62612089159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-62612089159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G097000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568309.10.0transcription factor MYB3R-2 isoform X2
SwissprotQ0JHU71e-155MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0Q3IJE60.0A0A0Q3IJE6_BRADI; Uncharacterized protein
STRINGTraes_1BL_C25B5DDB4.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.28e-83myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]