PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G104100.11.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 430aa MW: 47257.1 Da PI: 4.9643

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G104100.11.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.9	1.6e-11	197	225	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Brast08G104100.11.p 197 KTERRLAQNREAARKSRLRKKAYVQQLET 225 88*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.5E-8	192	239	No hit	No description
SMART	SM00338	9.5E-5	193	252	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.22	195	239	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-7	197	238	No hit	No description
Pfam	PF00170	7.4E-9	197	225	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	200	215	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.8E-27	278	352	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MVQGEESSWR MASDRDRAVP FGQALAYGIQ VHAPAAPPAN FLELQPAAAA YFGELGEALI 60 HGTCAGVNPV MIEGDAHTKS AYLAARPPTL EIFPSWPMNH LQQPYSANSQ SVGSTDSSSA 120 QNTMSQAELV SPVSMRTDSG QQQEVLMVTI DDYNYNQGLG PAAAATVTAP SFQQHAGGQD 180 KRKHGSTRKD DKLLDPKTER RLAQNREAAR KSRLRKKAYV QQLETGRIRL QQIEQELQRG 240 RSQGLLTGGC SAPGDMSPGA VMFDMEYARW LDEDSKYMIE LQSALQAQIL DGNLGTIVEE 300 CLRHYDELFH LRGVLARSDV FHLMTGMWAT QSERCFLWMA GFRPSEILKM LTPQLDPLTE 360 QQLLGMFNLQ QSSEQAEEAL AQGLHQLHQS LADAVGAGPL NDGADVANYT SLMALALDRL 420 DNLESFYRE*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MVQGEESSWR MASDRDRAVP FGQALAYGIQ VHAPAAPPAN FLELQPAAAA YFGELGEALI  60
HGTCAGVNPV MIEGDAHTKS AYLAARPPTL EIFPSWPMNH LQQPYSANSQ SVGSTDSSSA  120
QNTMSQAELV SPVSMRTDSG QQQEVLMVTI DDYNYNQGLG PAAAATVTAP SFQQHAGGQD  180
KRKHGSTRKD DKLLDPKTER RLAQNREAAR KSRLRKKAYV QQLETGRIRL QQIEQELQRG  240
RSQGLLTGGC SAPGDMSPGA VMFDMEYARW LDEDSKYMIE LQSALQAQIL DGNLGTIVEE  300
CLRHYDELFH LRGVLARSDV FHLMTGMWAT QSERCFLWMA GFRPSEILKM LTPQLDPLTE  360
QQLLGMFNLQ QSSEQAEEAL AQGLHQLHQS LADAVGAGPL NDGADVANYT SLMALALDRL  420
DNLESFYRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G104100.11.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024315091.1	0.0	transcription factor TGAL5 isoform X2
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A2K2DA63	0.0	A0A2K2DA63_BRADI; Uncharacterized protein
STRING	BRADI2G23890.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-102	bZIP family protein

Link Out ? help Back to Top
Phytozome	Brast08G104100.11.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]