PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G105300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 256aa    MW: 28555.9 Da    PI: 7.0088
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G105300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1332.1e-4141381128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                         lppG+rF Pt+eelv +yL++k++g +   ++e+vi+ +d+++++Pw+Lp+    ++++ + w++F+ r+ ++a+g r++r+t sgyWka 
  Brast08G105300.1.p   4 LPPGYRFYPTEEELVRFYLRQKLDGGHraRDIERVIPVADVCSLDPWQLPEahrGAAGGGEPWFYFCARQDREARGGRPSRTTPSGYWKAA 94 
                         79**********************99977778889**************9534444447789***************************** PP

                 NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         g+   v+ +  +g+ +g+kkt+vfy+grap g+kt+W m+eyr+
  Brast08G105300.1.p  95 GTPGLVYPAepNGRPIGTKKTMVFYTGRAPAGTKTKWKMNEYRA 138
                         ******988889999***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-503161IPR003441NAC domain
PROSITE profilePS5100548.5124161IPR003441NAC domain
PfamPF023651.9E-235137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGELPPGYRF YPTEEELVRF YLRQKLDGGH RARDIERVIP VADVCSLDPW QLPEAHRGAA  60
GGGEPWFYFC ARQDREARGG RPSRTTPSGY WKAAGTPGLV YPAEPNGRPI GTKKTMVFYT  120
GRAPAGTKTK WKMNEYRALD HDAPAALQPR SEFSLCRLYT KSGCPRQFDR RPCTGRGAAE  180
DPVSSFAAGA ELANEDDEVV LGRGQKRKRR APNHDTSSSS AACFMQQRQT HGGPDEEEEE  240
LVDSMIDWAE FLDWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-32416717171NO APICAL MERISTEM PROTEIN
1ut4_B3e-32416717171NO APICAL MERISTEM PROTEIN
1ut7_A3e-32416717171NO APICAL MERISTEM PROTEIN
1ut7_B3e-32416717171NO APICAL MERISTEM PROTEIN
3swm_A3e-32416720174NAC domain-containing protein 19
3swm_B3e-32416720174NAC domain-containing protein 19
3swm_C3e-32416720174NAC domain-containing protein 19
3swm_D3e-32416720174NAC domain-containing protein 19
3swp_A3e-32416720174NAC domain-containing protein 19
3swp_B3e-32416720174NAC domain-containing protein 19
3swp_C3e-32416720174NAC domain-containing protein 19
3swp_D3e-32416720174NAC domain-containing protein 19
4dul_A3e-32416717171NAC domain-containing protein 19
4dul_B3e-32416717171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G105300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0990841e-121FP099084.1 Phyllostachys edulis cDNA clone: bphyem111h11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568356.11e-150NAC domain-containing protein 90
SwissprotQ9FMR34e-60NAC90_ARATH; NAC domain-containing protein 90
TrEMBLI1HIZ61e-148I1HIZ6_BRADI; Uncharacterized protein
STRINGBRADI2G23967.11e-149(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-62NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]