PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G112400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 333aa    MW: 35124.6 Da    PI: 5.3908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G112400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.2e-20141190255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Brast08G112400.1.p 141 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 190
                         7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-36141204IPR001471AP2/ERF domain
CDDcd000181.52E-19141200No hitNo description
SuperFamilySSF541712.68E-22141199IPR016177DNA-binding domain
PfamPF008471.0E-13141190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-33141199IPR001471AP2/ERF domain
PROSITE profilePS5103225.686141198IPR001471AP2/ERF domain
PRINTSPR003671.0E-11142153IPR001471AP2/ERF domain
PRINTSPR003671.0E-11164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRAEAALRAC YYEMAGDPHR LGGSRLQARD DEEDCGRDDD RGEAMASSVL SGEYQAQEMS  60
TMVSALARVV SGGHGDRWAA SEADLPLPYG WAMGGDGRSY SRGAPTPDQL AAGLQERRSP  120
PAAMVEEQQQ LPMEEQQPGR RYRGVRQRPW GKWAAEIRDP HKAARVWLGT FETAEAAARA  180
YDEAALRFRG SRAKLNFPED ARLTAPAAPA PAASLASSPT MSSSASSSST AAPYAAAVSD  240
YLQYQMLLHG GAGSGVGGFP PYYGGSASAG AYSFPESSVT VASVPSSASS ALGHGEAAAQ  300
WAWPEPAPWT YPATTGSWSA SSQYPPPPHH PQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-24138198263ATERF1
3gcc_A6e-24138198263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G112400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721501e-85AK372150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147E01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231329.21e-111ethylene-responsive transcription factor ERF110
TrEMBLA0A2K2DA681e-109A0A2K2DA68_BRADI; Uncharacterized protein
STRINGBRADI2G24170.12e-55(Brachypodium distachyon)
STRINGPavir.J02402.1.p3e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-26ethylene response factor 110