PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G115500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 177aa    MW: 18555.8 Da    PI: 9.7885
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G115500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.61e-152372255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr+++ +g+Wv+eIr+p +   r r +lg++ +ae Aa a++aa + l+g
  Brast08G115500.1.p 23 RYKGVRRRR-WGKWVSEIRVPGT---RERLWLGSYASAEAAAVAHDAAVRLLRG 72
                        7*****777.**********943...5*********************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-222372IPR001471AP2/ERF domain
PROSITE profilePS5103218.5312380IPR001471AP2/ERF domain
SMARTSM003809.8E-222388IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-152372IPR016177DNA-binding domain
PfamPF008472.4E-82367IPR001471AP2/ERF domain
PRINTSPR003673.9E-82435IPR001471AP2/ERF domain
PRINTSPR003673.9E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDRRVAASGD GGEEDDPRLR RRRYKGVRRR RWGKWVSEIR VPGTRERLWL GSYASAEAAA  60
VAHDAAVRLL RGGPGGGRVA CGSGQQQQLS PRSVQRVASD AGMAADARLV ELRERVVVSA  120
PRGPQEAAAA ASAGIGAGAT EQGAACGNWR SCSGGGGEQL VVYGELSVDD MEILML*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G115500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1248361e-62AC124836.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092E21, complete sequence.
GenBankAC1376231e-62AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence.
GenBankAP0149611e-62AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-62CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566226.15e-43ethylene-responsive transcription factor ERF019
SwissprotQ9C9I82e-27ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A3B5Y2933e-44A0A3B5Y293_WHEAT; Uncharacterized protein
STRINGBRADI2G25050.12e-42(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]