PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G116000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28016.5 Da    PI: 9.5547
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G116000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.22.9e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++ rqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyey+s
  Brast08G116000.1.p  9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYAS 59
                        79***********************************************86 PP
2K-box108.57.6e-36831749100
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         ++ + +++ qqe+akL+++i++Lq+ +Rhl+Ge+++sL+lkeL++Le++Lek++ +iRskK+ell+++ie++qk+e +lq+en++Lr+k++
  Brast08G116000.1.p  83 VDVNSQQYFQQESAKLRNQIQSLQSANRHLVGESVGSLTLKELKSLENRLEKGIGRIRSKKHELLFAEIEYMQKMEADLQSENMYLRAKMA 173
                         667788***********************************************************************************98 PP

               K-box 100 e 100
                         e
  Brast08G116000.1.p 174 E 174
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.922161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-42160IPR002100Transcription factor, MADS-box
CDDcd002659.97E-46275No hitNo description
SuperFamilySSF554558.89E-33274IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-32323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-323859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-2885172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.02188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFSS RGRLYEYASN  60
STRSTIDRYK KASASPSGSA PTVDVNSQQY FQQESAKLRN QIQSLQSANR HLVGESVGSL  120
TLKELKSLEN RLEKGIGRIR SKKHELLFAE IEYMQKMEAD LQSENMYLRA KMAEAERAAA  180
AELDALPTFD ARSYYQHQQQ QHLQVNMQLH EEAAASSSRY SSQPQRQDQA TATTTTALHL  240
GYEMTGPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-21185184Myocyte-specific enhancer factor 2B
1tqe_Q1e-21185184Myocyte-specific enhancer factor 2B
1tqe_R1e-21185184Myocyte-specific enhancer factor 2B
1tqe_S1e-21185184Myocyte-specific enhancer factor 2B
6c9l_A1e-21185184Myocyte-specific enhancer factor 2B
6c9l_B1e-21185184Myocyte-specific enhancer factor 2B
6c9l_C1e-21185184Myocyte-specific enhancer factor 2B
6c9l_D1e-21185184Myocyte-specific enhancer factor 2B
6c9l_E1e-21185184Myocyte-specific enhancer factor 2B
6c9l_F1e-21185184Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G116000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5883230.0HQ588323.1 Brachypodium distachyon MADS-box (MADS4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266821.11e-171uncharacterized protein LOC100832541
RefseqXP_010230319.11e-171uncharacterized protein LOC100832541 isoform X1
RefseqXP_024313924.11e-171uncharacterized protein LOC100832541 isoform X1
SwissprotQ8RU311e-113MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBLG9BIK91e-170G9BIK9_BRADI; MADS-box
STRINGBRADI2G25090.11e-171(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.12e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dreni L, et al.
    The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
    Plant J., 2007. 52(4): p. 690-9
    [PMID:17877710]