PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G136700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

SRS

Protein Properties

Length: 228aa MW: 23671.1 Da PI: 8.649

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G136700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	196.6	7.8e-61	8	164	4	152
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 g++sC+dCGnqakkdC ++RCRtCCks+gfdC+thv+stW+pa++rrerq+ + a + +++sk+ r l+++++++ s+t++ss Brast08G136700.1.p 8 GASSCNDCGNQAKKDCPYQRCRTCCKSQGFDCTTHVRSTWIPASRRRERQNPGPHGDTGA--LSPSSSSKKARLLSCQATTTNSRTSTSSR 96 7789*******************************************88766655444..44667777778777777766666666665 PP DUF702 95 eskkeletss......lPeevsseavfrcvrvssvdd....geeelaYqtavsigGhvfkGiLydqGl 152 + +++++++ lP+ v+++avfrcvrv+svdd ge+elaYq++v+i+Gh+f+G+LydqG Brast08G136700.1.p 97 SFDTTSSQQDapfresLPRYVRAPAVFRCVRVTSVDDggggGEDELAYQASVTINGHMFRGFLYDQGR 164 5444333333666668*****************7666699********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.0E-55	9	164	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.8E-26	11	53	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.6E-23	113	163	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MASVGGGGAS SCNDCGNQAK KDCPYQRCRT CCKSQGFDCT THVRSTWIPA SRRRERQNPG 60 PHGDTGALSP SSSSKKARLL SCQATTTNSR TSTSSRSFDT TSSQQDAPFR ESLPRYVRAP 120 AVFRCVRVTS VDDGGGGGED ELAYQASVTI NGHMFRGFLY DQGRGMAAAA SGNVSVDESS 180 SSHAAAVRSI SDLHLGTAVS SAVPPGVYNT VSGALILGGL SYGNTIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G136700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU959412	1e-44	EU959412.1 Zea mays clone 218086 LRP1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753858.2	1e-101	uncharacterized protein LOC100841519
Swissprot	Q94CK9	1e-46	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A0Q3G5A8	1e-105	A0A0Q3G5A8_BRADI; Uncharacterized protein
STRING	MLOC_59277.5	1e-85	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-36	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Brast08G136700.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]