PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G162400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 279aa    MW: 30170.7 Da    PI: 5.9514
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G162400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.74.8e-23104166159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.STTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.dpkvveitYegeHnhe 59 
                         ldDg +WrKYGqK +++s++pr+Y+rCt++   +C ++++v+r+++ d++++ +tY g H+++
  Brast08G162400.1.p 104 LDDGQAWRKYGQKYIQNSKHPRAYFRCTHKydqQCAAQRQVQRCEDdDKDIFRVTYIGVHTCQ 166
                         58***************************99999*********9752678***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-2497168IPR003657WRKY domain
SuperFamilySSF1182903.4E-2399168IPR003657WRKY domain
PROSITE profilePS5081118.46499168IPR003657WRKY domain
SMARTSM007741.2E-32104167IPR003657WRKY domain
PfamPF031061.8E-22105166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAPPPPWMEV MDDLMKGQEF ATQLQGLLRD NPKVGLLMDQ ILQSFSRAID ATAKAGGEWS  60
SDVQSEVTYG GSAGGKRKSG AGGDRRGACR RRTSPIVTKT MSNLDDGQAW RKYGQKYIQN  120
SKHPRAYFRC THKYDQQCAA QRQVQRCEDD DKDIFRVTYI GVHTCQDPAA AAAPVHVSRT  180
AACHLISFSP NPNGGATPTT TASTTTTVQV GSGLESLKRE SGDQEEVLSS STPAAPPPTW  240
PDLGDVMSAP HCCYGGVDFL EDYTQGLEYI LPFDLDGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-31100166469OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G162400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0978322e-59FP097832.1 Phyllostachys edulis cDNA clone: bphyem119e03, full insert sequence.
GenBankFP0985222e-59FP098522.1 Phyllostachys edulis cDNA clone: bphylf033j03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231532.11e-136probable WRKY transcription factor 70
TrEMBLI1HKK01e-135I1HKK0_BRADI; Uncharacterized protein
STRINGBRADI2G30695.11e-136(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-16WRKY DNA-binding protein 70