PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G166200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 769aa    MW: 83114.4 Da    PI: 6.2366
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G166200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.12.6e-1765116556
                         SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++++q+++Le++F+++++p+++ r eL+k+l++   qVk+WFqNrR  +k
  Brast08G166200.1.p  65 KRHSRHQIQQLEAVFQRCPHPDEQLRLELSKRLNMGLLQVKFWFQNRRSSKK 116
                         5689********************************************9988 PP
2START36.31.3e-122614047131
                         HHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S........EEEE CS
               START   7 aqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla........kaet 81 
                          +e+  +a+ ++p+W + s  + +n++ +     ++        + ++  r++g+v +++a+l ++++d + +W+e+++        + ++
  Brast08G166200.1.p 261 SEEFKMLATMNAPMWLQTSdgDVLNNQAYNNATYPGILgicpegFAVDGTRTTGIVLGNAADLTSIFMDPA-RWSEMFPgiivagvtSSAI 350
                         5677778999*********995555555555555544455555579***************9999999999.*******888877777777 PP

                         EEEECTT...EEEEEEEEXXTTXX-SSXEEEEEEEEEEE....TTS-EEEEEEEEE CS
               START  82 levissg...galqlmvaelqalsplvpRdfvfvRyirq...lgagdwvivdvSvd 131
                         +++  s+     l++m+ael +l p  p  +v vR++rq   l+ + w++vdvSvd
  Brast08G166200.1.p 351 INHSASQprlVQLVQMNAELKVLAPRGP--VVKVRFMRQcmwLQPKLWAVVDVSVD 404
                         7777777988888888888888555555..555666666666*************8 PP
3START60.64.8e-20432491146205
                         EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 146 ellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                         +llpSg++ie++++gh+kvt + h+++++r+++ l+++l++sg+a+ga++w+a lqrqce
  Brast08G166200.1.p 432 RLLPSGCIIEEMDDGHCKVTCIVHAEYDERIIQPLYHPLLRSGQAFGARRWLASLQRQCE 491
                         589********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-1744121IPR009057Homeodomain-like
SuperFamilySSF466892.91E-1657121IPR009057Homeodomain-like
PROSITE profilePS5007115.25658118IPR001356Homeobox domain
SMARTSM003893.2E-1660122IPR001356Homeobox domain
CDDcd000865.46E-1761119No hitNo description
PfamPF000466.4E-1565116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
CDDcd146860.0027109146No hitNo description
PROSITE profilePS5084826.196246495IPR002913START domain
SuperFamilySSF559611.02E-14254491No hitNo description
SMARTSM002340.0035255492IPR002913START domain
CDDcd088754.99E-66258491No hitNo description
PfamPF018529.0E-8261404IPR002913START domain
PfamPF018521.4E-15432491IPR002913START domain
SuperFamilySSF559618.55E-6513731No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MDGEGQQDSS DLNIELDFSD DTNLGEETDG VSSEANAEDD ANTVVANEDS NDGAATRRTA  60
PRSSKRHSRH QIQQLEAVFQ RCPHPDEQLR LELSKRLNMG LLQVKFWFQN RRSSKKNKME  120
QQECKQMREE NEMLLAENKA IKAALQSKAC ISCGGPSMHI ELRDTLEKRR LRMENAKLKE  180
DLMRTTVFVS HMAGSNAGAA AAAAQGAAPI PLPAYSPYGF NNGGRPLLSH PAAVPAPAMS  240
FAARSNAASH ITLLDHLINA SEEFKMLATM NAPMWLQTSD GDVLNNQAYN NATYPGILGI  300
CPEGFAVDGT RTTGIVLGNA ADLTSIFMDP ARWSEMFPGI IVAGVTSSAI INHSASQPRL  360
VQLVQMNAEL KVLAPRGPVV KVRFMRQCMW LQPKLWAVVD VSVDGFIGHN DGRALDLYQT  420
TAALPTMYTA YRLLPSGCII EEMDDGHCKV TCIVHAEYDE RIIQPLYHPL LRSGQAFGAR  480
RWLASLQRQC EYFAVLRSDL VLTLSNAGAA MQPAGKKGVL ELAQRMTMNF YVAMCGLPAG  540
QPWNDWTGGI GVGSERFELA VHFVTLDHQG VLSATTTVWL PGVPAGRVFN YLCDGTRRGE  600
WDSLASGGPM KDVASVATSQ LYGNSVSVLC PSVYNGTTNK DNKLILQEAY ADASCMFMAY  660
APIDKQYMHQ VMNGGGHTSF SLSPCGFVVL PDGQGQQSVQ TISAGSSSSA GVSAAGGGSI  720
VSALYQTEWS GPPQQNLALG LMDDIGNLLC HAIKKIKDAV QTSLVVTA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116RRSSKKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G166200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314575.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLI1HKQ60.0I1HKQ6_BRADI; Uncharacterized protein
STRINGBRADI2G31600.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-124HD-ZIP family protein