PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G168600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 247aa    MW: 25247.8 Da    PI: 6.3063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G168600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000297092123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C++ F++   L  H++ H
  Brast08G168600.1.p 70 YECVFCKRGFTTAQALGGHMNIH 92
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.24E-66896No hitNo description
PROSITE profilePS5015710.997097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MASGSEAAAG GPSEKAAGVL SSPRRDQEAV VGSLRPDQAE AAAGQVVAGD DEPAAAAEAP  60
AAAAVARPYY ECVFCKRGFT TAQALGGHMN IHRRDRAKPT TAPTSSVFVR NLECYSQQSY  120
HHGYEYPVLP TQPGSGSLAM YYRGSTGPAA TTTGAVVVAG EAAAASMNPS SSASASPREL  180
SLFGAAGAGA APRDHDLHLG LGSFHGRVVA GGGEPEETLA ERQGGEPPAE RDQLDLELRL  240
GRRPRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G168600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454775e-35AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149615e-35AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233298.14e-94transcriptional regulator SUPERMAN
TrEMBLA0A0Q3MRQ52e-92A0A0Q3MRQ5_BRADI; Uncharacterized protein
STRINGBRADI2G31850.11e-93(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-13C2H2 family protein