PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G171300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 268aa    MW: 30525.4 Da    PI: 9.2914
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G171300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.2e-314494151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Brast08G171300.1.p 44 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 94
                        79***********************************************95 PP
2K-box100.22.8e-331122084100
               K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                         s++   ++e +a+++qqe+akL+ +i nLq+++R l+Ge++ ++s ++L+qLe +L+k+l kiR++Knell+++ie++q++e elq++n +
  Brast08G171300.1.p 112 SNT-GtVAEINAQHYQQESAKLRHQITNLQNSNRTLIGESMATMSQRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRREMELQNDNLY 201
                         333.349999********************************************************************************* PP

               K-box  94 Lrkklee 100
                         Lr+k++e
  Brast08G171300.1.p 202 LRSKVAE 208
                         ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.883696IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-423695IPR002100Transcription factor, MADS-box
CDDcd002652.67E-4437110No hitNo description
SuperFamilySSF554557.59E-3337109IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003892IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-323858IPR002100Transcription factor, MADS-box
PfamPF003191.0E-264592IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-325873IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-327394IPR002100Transcription factor, MADS-box
PfamPF014866.0E-25121206IPR002487Transcription factor, K-box
PROSITE profilePS5129714.214122212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MQILKEQLAT PSTCLMVKES ESPGSGSGSA GAAEKMGRGR IEIKRIENTT NRQVTFCKRR  60
NGLLKKAYEL SVLCDAEVAL IVFSSRGRLY EYSNNSVKAT IERYKKATSD TSNTGTVAEI  120
NAQHYQQESA KLRHQITNLQ NSNRTLIGES MATMSQRDLK QLEGRLDKGL GKIRARKNEL  180
LCAEIEYMQR REMELQNDNL YLRSKVAENE RGQQQTLNMM GAASTSDQYD QNMIHCDPRN  240
FLQFNIMQQP QYYQQQEDRK AFNSVER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-2036104169Myocyte-specific enhancer factor 2B
1tqe_Q4e-2036104169Myocyte-specific enhancer factor 2B
1tqe_R4e-2036104169Myocyte-specific enhancer factor 2B
1tqe_S4e-2036104169Myocyte-specific enhancer factor 2B
6c9l_A4e-2036104169Myocyte-specific enhancer factor 2B
6c9l_B4e-2036104169Myocyte-specific enhancer factor 2B
6c9l_C4e-2036104169Myocyte-specific enhancer factor 2B
6c9l_D4e-2036104169Myocyte-specific enhancer factor 2B
6c9l_E4e-2036104169Myocyte-specific enhancer factor 2B
6c9l_F4e-2036104169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G171300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693130.0KF469313.1 Brachypodium distachyon MADS-box transcription factor 18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288321.11e-176MADS-box transcription factor 58-like
SwissprotQ2V0P11e-147MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLI1HKZ21e-175I1HKZ2_BRADI; MADS-box transcription factor 18
STRINGBRADI2G32910.11e-176(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-100MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  4. Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
    Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
    Plant Sci., 2012. 183: p. 183-9
    [PMID:22195592]
  5. Yun D, et al.
    OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
    Mol Plant, 2013. 6(3): p. 743-56
    [PMID:23300256]
  6. Yan D, et al.
    Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.
    Plant J., 2015. 82(1): p. 12-24
    [PMID:25647350]
  7. Zheng M, et al.
    DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).
    New Phytol., 2015. 206(4): p. 1476-90
    [PMID:25675970]
  8. Chen R, et al.
    A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.
    Mol Plant, 2015. 8(7): p. 1069-89
    [PMID:25684654]
  9. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]