PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G171400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family DBB
Protein Properties Length: 324aa    MW: 34336.2 Da    PI: 5.0618
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G171400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52e-06446541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         C+ +e  e++  C  ++  lCe C    H        H++ p
  Brast08G171400.1.p  4 LCSACEAAEARVLCCADEAALCERCDRDVHAAnrlagkHQRLP 46
                        7******99*********************6577888888776 PP
2zf-B_box26.11.7e-0859101137
            zf-B_box   1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                         s+++kC+ ++e ++ +fC +++ llC+ C ++ H        H
  Brast08G171400.1.p  59 SQPPKCDICQECHAYFFCLEDRALLCRGCDVAVHTAnafvstH 101
                         5899*******88*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.8E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.85147IPR000315B-box-type zinc finger
CDDcd000213.13E-6347No hitNo description
SMARTSM003361.2E-1259106IPR000315B-box-type zinc finger
PROSITE profilePS501199.10159106IPR000315B-box-type zinc finger
PfamPF006432.1E-760102IPR000315B-box-type zinc finger
CDDcd000215.27E-862106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD EAALCERCDR DVHAANRLAG KHQRLPLLSP GSASAATVSQ  60
PPKCDICQEC HAYFFCLEDR ALLCRGCDVA VHTANAFVST HRRFLLTGVQ VSLDEQEDDC  120
LPDPPEPSPA PAPPPAPAAK RDQASVYGEG DFSWAAAATP DAESLPDWSI VNEQFGSPAP  180
RHAEAAASRT PPKRSPAFSG QGGMMDWPLG EFFGGFGNFN AGFGFGESGT SKADSGKLGG  240
STGGSPYYVS SSDDRNADEL FGQVPEMHRS APELPSPPTA SGLHWQRRPA DYGAFVPDIS  300
SPDSSLRCCF PADQTAVKRR RKC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G171400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568756.10.0B-box zinc finger protein 22
TrEMBLI1HKZ11e-179I1HKZ1_BRADI; Uncharacterized protein
STRINGBRADI2G32900.11e-180(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.16e-54light-regulated zinc finger protein 1