PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G178200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 396aa    MW: 41779.6 Da    PI: 7.6193
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G178200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41.1e-07117139426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         + C++f+++G C++Gd C  aHg
  Brast08G178200.1.p 117 AACPDFRKGGACRRGDACELAHG 139
                         78****************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.08970102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-5111141IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5113140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671113141IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-6117139IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.146149173IPR000571Zinc finger, CCCH-type
SMARTSM0035610149172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MMMMMGEGSA HAPPWQCTAP SGAGDDVAAP PYHALSALRR YLPSNEPPSG DAQDGGDEDD  60
DAAATADAYA CDEFRMYEFK VRRCTRGRSH DWTDCPFAHP GEKARRRDPR RHRYSGAACP  120
DFRKGGACRR GDACELAHGV FECWLHPARY RTQPCKDGAA CRRRVCFFAH TPAQLRSPPC  180
SPRAASASSG SSPPLADSYD GSPLRRQAFE SYLGGGSGKS HLVQAQLSSS PTSTLLSPPR  240
SPPSDSSPPM SPDAALRAAS WPVSDVLASL RQLRLGGPQS SPRPAGSFLA AGYSTAFGSP  300
KSPAAGIYSL PSTPTRPSSS LVTVTAPSGA TVSVEPIDLG LIVEEEPPVE RVESGRALRA  360
KVFERLSKEA AVCNGTTEVP AAAAPDVGWV SDLIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G178200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1324861e-110AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence.
GenBankAK1063921e-110AK106392.1 Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence.
GenBankAP0149611e-110AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-110CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568774.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N41e-150C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLI1HL320.0I1HL32_BRADI; Uncharacterized protein
STRINGBRADI2G33270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-69C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]