PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G181200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 163aa    MW: 18159.3 Da    PI: 8.7588
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G181200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-3091148259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYG+K vk+s++pr+YYrC+ ++C vkk+ver+++dp++v++tY g Hnh 
  Brast08G181200.1.p  91 EDGFKWRKYGKKAVKDSPNPRNYYRCSAERCGVKKRVERDRDDPRFVVTTYDGVHNHA 148
                         8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-3084150IPR003657WRKY domain
PROSITE profilePS5081129.785150IPR003657WRKY domain
SuperFamilySSF1182903.14E-2686150IPR003657WRKY domain
SMARTSM007743.7E-3390149IPR003657WRKY domain
PfamPF031061.7E-2391147IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAASLGLIPE ADLFSSSPFQ ADADFTSQLH DYQHRYPSDL EYSAAPPVFF FPGAGKEEEK  60
MKAAARKEKA RAGGGGRIGF RTRSEEVEIL EDGFKWRKYG KKAVKDSPNP RNYYRCSAER  120
CGVKKRVERD RDDPRFVVTT YDGVHNHASP VSAAAALHYY CS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-2573150177Probable WRKY transcription factor 4
2lex_A8e-2573150177Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G181200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571962e-76AK357196.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048A03.
GenBankAK3670652e-76AK367065.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2050M16.
GenBankDQ8404162e-76DQ840416.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 17 (WRKY17) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231637.11e-85probable WRKY transcription factor 50
TrEMBLI1HL633e-84I1HL63_BRADI; Uncharacterized protein
STRINGBRADI2G33540.15e-85(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-36WRKY DNA-binding protein 50