PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G193000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 224aa MW: 23362.8 Da PI: 11.6105

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G193000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	9e-11	31	76	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR riN +++Lr+++P a ++Ka+ L +v +k+L Brast08G193000.1.p 31 VHSEAERRRRGRINAHLATLRRMIPDA-----SQMDKASLLASVVSQVKDL 76 59************************9.....5789999988888777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.19E-12	18	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.986	27	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-8	31	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-12	31	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.81E-8	32	78	No hit	No description
SMART	SM00353	8.8E-10	33	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.6E-5	120	171	No hit	No description
SuperFamily	SSF55021	1.26E-5	123	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MATTCRSLTA TPDLSSSSGR SVTEARRTLK VHSEAERRRR GRINAHLATL RRMIPDASQM 60 DKASLLASVV SQVKDLKRRA TAGTITHAAA AAAAGPIPPE ANEVTVRCCC ASAGGDRATH 120 IRAAVSCEDR PGLLAGLAGA ARGLGLRALR AEVASLGGRA HHVLVLRREE EGGDLGAGLR 180 PLEAAVRQAL AEVAFPEMAR GGGGSRSRRQ RLLEARCSVM HSV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G193000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566506.1	1e-107	transcription factor bHLH30
TrEMBL	I1HLG4	1e-105	I1HLG4_BRADI; Uncharacterized protein
STRING	BRADI2G34600.1	1e-106	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3347	36	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	2e-16	bHLH family protein

Link Out ? help Back to Top
Phytozome	Brast08G193000.1.p