PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G193800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 217aa    MW: 24034.9 Da    PI: 10.566
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G193800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-153579147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r rWT+eE++++++a +++G + Wk+I + +  ++t  q++s+ qk+
  Brast08G193800.1.p 35 RERWTAEEHDRFLHALHLFGRD-WKRIEALVA-TKTSVQIRSHAQKF 79
                        78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-162983IPR009057Homeodomain-like
PROSITE profilePS5129417.4833084IPR017930Myb domain
SMARTSM007171.2E-103482IPR001005SANT/Myb domain
TIGRFAMsTIGR015579.8E-173482IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.4E-83575IPR009057Homeodomain-like
PfamPF002491.9E-123578IPR001005SANT/Myb domain
CDDcd001673.10E-93780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAAMFGGVRM PAAPSSSSLS GRKKLRKPYT ITRPRERWTA EEHDRFLHAL HLFGRDWKRI  60
EALVATKTSV QIRSHAQKFF LKAHKSGLAA GLPPPLHPRR RSPALLLQQP GNADMQVPSM  120
EECHRARASP GCLCPDIDRP WLDKDGSPIV ATGLPLSPAD LRFAQVYRFV GDFFGADDAR  180
VPVEARLWSL QLQGMDPLVL GTILIVLSNL QENLFA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G193800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3595771e-59AK359577.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1099F17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566512.21e-120protein REVEILLE 6
TrEMBLA0A2K2DBT51e-113A0A2K2DBT5_BRADI; Uncharacterized protein
STRINGBRADI2G34670.11e-120(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.19e-24MYB_related family protein